Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq814255 298 7e-76 seq457113 289 3e-73 seq57132 113 5e-20 >seq814255 Length=4022 Score = 298 bits (330), Expect = 7e-76 Identities = 261/325 (80%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | | |||| | ||||| |||||||||||||| Sbjct 1300 AGCAGGGCTTCGATGTCGGGCTCGATGTCAATGGTCGGAAAGCGGCGGCTGTACCTGCGC 1241 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||||| |||||||| ||||||||| ||||||||||| | |||||||||| Sbjct 1240 ACCGGCACGCCGTCAGGACCCACCAGGAACTTCTCAAAGTTCCAGGCAATGTCGTTGCGG 1181 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | ||| ||||| Sbjct 1180 CACACGGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCACAGGGGTCATCGCTG 1121 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || ||||| || ||||||||||||||| | || || || ||| Sbjct 1120 GGCGCCGGCAGGGCCTCGCGCAGGAAAGCAAAGAGCGGATGTGCCTTGGCGCCATTCACC 1061 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||| |||||||||| | ||||| |||||||| |||| || || |||| ||| Sbjct 1060 TCGCATTTCTCGAAGACTGTGAAGTTGGGCTCGAACCCGTCGCCTATTCGAACGTACTTA 1001 Query 83357 AGGGAAGGCAAGATCTCGGCATTCT 83381 ||||| || |||||| |||||| Sbjct 1000 AGGGACTTCAGGATCTCTTCATTCT 976 Score = 178 bits (196), Expect = 2e-39 Identities = 180/232 (78%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || | |||||||| |||||||| || || || ||||| | ||| || |||| Sbjct 738 CCTGATGCCTAAACTGGTTGCACGGGAAGCCGAGTACCACCAGGCTCCGGATCCCGAGGC 679 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||| | Sbjct 678 GCCGCTGCAGATCGTTCATCTGGGTGTAGTCCCGGACCGTGGTACCTCAGAGGGACGCCA 619 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTC--C 83568 | ||||||||||||| ||| |||||| | | |||| | ||||| || |||||| | Sbjct 618 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCATCGG--CTCCTCGGC 561 Query 83569 GGTAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCA 83620 | | |||||| || ||||||| |||||| | ||| || ||||| ||| Sbjct 560 GCCGAGCGGGCGCGCCGAGAAGGTGTACAC---TGTGGCCTGCGCCGCCGCA 512 >seq457113 Length=981 Score = 289 bits (320), Expect = 3e-73 Identities = 367/500 (73%), Gaps = 40/500 (8%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCA-GGGTCTGGCAGCGGTGGCTGT-ACCTGC 83114 |||||| | |||||| |||||| | | | ||||| | ||||| || ||| | |||| Sbjct 227 AGCAGGCCTTCGATG--GGGCTCGATGTGGATGGGTCGGAAAGCGGCGGTTGTTATCTGC 284 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 || ||| |||| | ||||||| ||||||||| | ||||||||| | |||||||| Sbjct 285 GCC--GGCA---CGTCCGGGCCCACCAGGAACTTCTCAACGTTCCAGGCAATGTCGTTGC 339 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| ||||| |||| |||| || ||||||| ||| ||||| || || | ||| Sbjct 340 GGCACACGGGAGATCAGGTGATGAACTTGGGGTCGGTCATGAGCGCACT-GGGTTGGCGC 398 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | ||||||||||||||||| | ||||| || |||||||| |||||| || || || | Sbjct 399 TGGGCGCCGGCAGGGCCTCGAGCAGGAAAGCAAAGAGCGGCTGTGCCTAGGCGCCATTCA 458 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 ||||||| ||||||||| || ||| || || ||||||| || Sbjct 459 CCTCGCATTTCTCGAAG----TA----------------CGTCGCCGGGTCGGACGTACT 498 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414 | ||||| || |||| | |||| |||||| |||| ||||||||| |||| Sbjct 499 TGAGGGAGTTCAGAATCT--TCGTTCTTGGCGTTCTCCT-------GAACTGGTTGCACG 549 Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474 |||| || ||||| ||||| ||||| | ||| |||||||||||||||| ||||||||| | Sbjct 550 GGAAGCCGAGCACCACCAGGCCCCG-GGTCCCAGGCGCCGCTGCAGCTTGTTCATCTGGG 608 Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGC 83534 |||| || |||||||| | ||||||||||| || || ||||||||||||| ||| || Sbjct 609 TGTAGTCGTGGACCGTGGTGCCTCAGAGGGAGGCCACATTCTCGATGAGCAGCACCTTGC 668 Query 83535 CCCGTAAGAAGCCTAAGCTC 83554 || | | | |||| | |||| Sbjct 669 CCGGCAGGGAGCCCAGGCTC 688 >seq57132 Length=3380 Score = 113 bits (124), Expect = 5e-20 Identities = 204/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || || ||| Sbjct 515 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTTGCCTCCCGCCTGC 457 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || || | ||||||| Sbjct 456 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAACAGTACAACTGCA 397 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | || |||| ||||| Sbjct 396 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCAGCCCGCATTAAGCTGATCCGCCACTAC 338 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGA-TCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| ||||| || || |||| || | | |||| ||| Sbjct 337 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGTGTCTGGACTCTCGA-GTTCGTGGG 279 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 278 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602396777980240