Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq198121 116 3e-21 seq345138 109 5e-19 seq713515 107 2e-18 seq256033 93.3 4e-14 seq335148 89.7 4e-13 seq364364 87.8 2e-12 seq742764 84.2 2e-11 seq449898 82.4 6e-11 seq235349 82.4 6e-11 >seq198121 Length=2544 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| ||||||||||| || ||||| ||||| | | Sbjct 924 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 865 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| ||| Sbjct 864 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 805 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 804 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 745 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 744 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 698 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| |||||||| || || ||||| ||||| | | Sbjct 468 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 409 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| ||| Sbjct 408 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 349 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 348 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 289 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 288 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| |||||||| || || ||||| ||||| | | Sbjct 696 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 637 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| ||| Sbjct 636 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 577 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 576 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 517 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | || || || || || ||||| Sbjct 516 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 470 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | | Sbjct 1154 CCACCTCGGAGACGGAGTACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1095 Query 21009 AGGGTTTGGGCGTCCT-CCAGCTGTTTGCCCGCATAAAT-AAGTCTCTGCTGGTCCACGG 21066 ||||| | | || | |||||||||| || ||| | || || ||||||||||| | Sbjct 1094 AGGGTGCGTCCATCTTCCCAGCTGTTTCCCGGCAAAGATCAACCCTCTGCTGGTCGGGAG 1035 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | || |||| |||||| Sbjct 1034 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 975 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| || || | || || || || || ||||| Sbjct 974 CCTCGAGGGTAATGGTCTTACCAGTAAGGGTCTTCACGAAGATCTGCAT 926 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| |||| ||||||||||| || ||||| || || | | Sbjct 240 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 181 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| ||| Sbjct 180 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 121 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 120 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 61 Query 21129 TCCACGGTAATGGTCTT-GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| | || | ||||| || || || ||||| Sbjct 60 TCGAGGGTGATGGTCTTCAACAGTCAGGGTTTTCACGAAGATCTGCAT 13 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||| ||||| || || ||||| ||||| | |||||| | | || ||||| ||| Sbjct 1358 TGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGTTGT 1299 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | ||||||||||| || | ||||||||||| |||||| Sbjct 1298 TTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTC 1239 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | || |||| |||||| || | ||| |||||||| || || Sbjct 1238 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTC 1179 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || || || || ||||| Sbjct 1178 AGGGTCTTCACGAAGATCTGCAT 1156 >seq345138 Length=2957 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| || | |||||||| || || ||||| ||||| | | Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||| ||||||||| ||| | || || | ||||||||| ||| Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || || || | ||| || |||| |||||| Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| | | || || || || || ||||| || Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTT 2544 >seq713515 Length=817 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| ||| ||||| || |||||||| ||||| | | Sbjct 416 CCCCTC--AGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAA 473 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| | || || |||||||| || || | Sbjct 474 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGA 533 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | | | || |||| ||||||| | Sbjct 534 TGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCT 593 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| |||||||||||||| | || || || || || ||||| Sbjct 594 CGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 >seq256033 Length=4257 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| ||| |||| |||| |||||||| || |||||||| ||||| | Sbjct 3007 CCACCCCGCAGATGGAGGACCAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCAGAA 2948 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC-CACGGG 21067 || || | || |||||||| ||||| ||| |||||| ||||||||||| ||| Sbjct 2947 AGAACACGGCCATCATCCAGCTGCTTGCCTGCAACAATAAGCCTCTGCTGGTCAGGGGGG 2888 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 |||||||| || || |||||| ||||| | | || |||||||||||| Sbjct 2887 GACGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAGTGGTTTCACCGGGCTCCAC 2828 Query 21128 TTCCACGGTAATGGTCTTGCC 21148 || | ||| || |||||||| Sbjct 2827 CTCGAGGGTGATAGTCTTGCC 2807 >seq335148 Length=7748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 ||||||| | ||||||| ||| | |||||||| || || ||||||||||| | || Sbjct 7082 CCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGA 7141 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || | || |||||||||||||| ||| | || || | |||||||| || | | Sbjct 7142 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTAGGTGGGATG 7201 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 || |||||||| ||| || || || | ||| || |||| |||| | Sbjct 7202 CCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACCTTG 7261 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 | ||| ||||||||||| || | || || || || || ||||| || Sbjct 7262 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 7308 >seq364364 Length=1710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || || || ||||| | || || || | || |||||||| ||||| ||| | || Sbjct 1223 TTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATG 1282 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 | ||||||||||| ||| | |||||| || || |||||| ||||| | || Sbjct 1283 CGCCTCTGCTGGTCAGGGGGTATGCCTTCTTTATCCTGGATCTTAGCCTTCACATCCCCA 1342 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | || |||| ||| ||| || | ||| ||| ||||||| || || | || ||||| Sbjct 1343 ATGGTGTCACTGGGGTCCACCTCTAGGGTGATGCTCTTGCCAGTCAAGGACTTAACAAAG 1402 Query 21168 ATTTGCATTTTGA 21180 || |||||||||| Sbjct 1403 ATCTGCATTTTGA 1415 >seq742764 Length=2195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 || || | ||| | ||| | |||||||||||||| ||||| ||||| | || || || Sbjct 1615 AGTCTTAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGC 1556 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || |||| ||||||||| ||| |||| ||||| ||||| || || | |||||| Sbjct 1555 CCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCC 1496 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTAT-CACCGGGCTCCGTTTCCACGGT 21136 || | ||| || ||| || | | | |||| || ||| || || | ||| Sbjct 1495 TTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGT 1436 Query 21137 AATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | |||||| || || | ||||| ||||| || ||||| ||| Sbjct 1435 GAGGGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATCTTG 1393 >seq449898 Length=3288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || || || || | ||| | ||| | |||||||||||||||||||| ||||| | || Sbjct 1237 CCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAA 1296 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || | | || |||| ||||||||| | | |||| ||||| ||||| || || | Sbjct 1297 GTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATT 1356 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 | |||||| || ||| || ||| || | | | ||||| || || || Sbjct 1357 CTTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCG 1416 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | ||| |||||||| || || | ||||| ||||| || ||||| ||| Sbjct 1417 AGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTG 1464 >seq235349 Length=927 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| ||||| |||||||| | || ||||| ||||| | Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||||||||||||||||| | || || ||||||||| | Sbjct 92 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 151 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| | | || || || | | | || |||| || ||| Sbjct 152 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 211 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| || | || || | || || ||||| || Sbjct 212 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417931144278296