Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq345138 111 2e-19 seq187118 107 2e-18 seq235349 102 9e-17 seq311186 100 3e-16 seq650951 98.7 1e-15 seq473712 98.7 1e-15 seq437210 98.7 1e-15 seq291155 98.7 1e-15 seq449898 93.3 5e-14 seq416377 93.3 5e-14 seq87651 91.5 2e-13 seq428056 89.7 6e-13 seq422973 87.8 2e-12 seq59002 87.8 2e-12 >seq345138 Length=2957 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||| || || || ||||| || ||||||||||| | || Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| |||||| |||| || | | ||||| || | || || Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||| |||||||| |||||| | || ||||| || ||||| ||||| ||| || Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTTTGCG 2548 >seq187118 Length=2971 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1052 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1111 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1112 ATACTAACGAGGAT 1125 >seq235349 Length=927 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | || || ||||| ||||| ||| ||| | || || ||||| |||| Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| || || || ||||| || |||||||||||| | Sbjct 92 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 151 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| | |||| |||| || | | ||||| || || || || Sbjct 152 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 211 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||| |||||||| ||||| || || ||||| | ||||| ||||| ||| || Sbjct 212 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTTTGCG 265 >seq311186 Length=7699 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4829 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4888 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4889 ATACTAACGAGGA 4901 >seq650951 Length=1531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 281 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 222 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 221 TACTAACGAGGA 210 >seq473712 Length=1166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 808 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 749 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 748 TACTAACGAGGA 737 >seq437210 Length=1130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| | ||||||||||||||||||| |||||||||||| Sbjct 251 TCTCCCCGTCGGGGAATCGAACCCCGCTCTCCCGCGTGACAGGCGGGGATACTCACCACT 192 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 191 ATACTAACGAGGAT 178 >seq291155 Length=2315 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1179 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1178 TACTAACGAGGA 1167 >seq449898 Length=3288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| ||| | || Sbjct 1248 CAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATC 1307 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | ||| || |||| || || |||| ||||| || | || | || ||||| || Sbjct 1308 TTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATC 1367 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | |||||| ||| | | | | || || || ||| || |||| |||||||| Sbjct 1368 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCGAGGGTGATGGT 1427 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || || |||||||| || ||||| || Sbjct 1428 CTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 1463 >seq416377 Length=912 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| || | ||| ||| | || || ||||| |||| Sbjct 549 CCGCCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 490 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| || || || ||||| || |||||||||||| | Sbjct 489 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 430 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| | |||| |||| || | | ||||| || || || || Sbjct 429 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 370 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| |||||||| ||||| || || ||||| | ||||| ||| | ||| Sbjct 369 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCGTCTTT 319 >seq87651 Length=1287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 914 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 855 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 854 ATACTAACGAGGA 842 >seq428056 Length=1957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||| | ||||||||||||| Sbjct 243 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCAGGGATACTCACCACTA 184 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 183 TACTAACGAGGA 172 >seq422973 Length=1992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||| |||||||||| |||||||||| |||||||||||||||||| |||| Sbjct 1069 GGGAATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAG 1010 Query 60136 GAT 60138 ||| Sbjct 1009 GAT 1007 >seq59002 Length=2818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||| |||||||||| |||||||||| |||||||||||||||||| |||| Sbjct 193 GGGAATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAG 134 Query 60136 GAT 60138 ||| Sbjct 133 GAT 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565806324593680