Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq345138 123 2e-23 seq713515 104 1e-17 seq416377 96.9 2e-15 seq198121 96.9 2e-15 seq235349 93.3 3e-14 seq364364 89.7 3e-13 seq449898 86.0 4e-12 >seq345138 Length=2957 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || |||||||| ||||||||||| ||| Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||||||| ||||| || || || || ||||||||||| ||| Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| || || ||| | || | || | || | | ||||| Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| | || || ||||| |||||||||||| Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATC 2542 >seq713515 Length=817 Score = 104 bits (114), Expect = 1e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| |||||||| ||||||||||| || || ||| | || Sbjct 428 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 487 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||||||| |||||| || || | || || || || Sbjct 488 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 547 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 548 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 607 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 608 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | |||| |||||||| ||||||||||| || Sbjct 641 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 700 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || |||| | || |||| |||||||||||| || ||||||| ||||||||| Sbjct 701 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC 753 >seq416377 Length=912 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221 ||||| ||||| | |||||||||||| | || ||| |||| ||||||||||| || Sbjct 549 CCGCCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 490 Query 34222 -CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 ||| || ||| | || |||| ||| ||||| || || || || ||||||||||| | Sbjct 489 ACAG-TG-CGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTG 432 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTC 34338 | || ||||||||| | ||||| ||| | || | || | || | || || Sbjct 431 AGATGCCCTCCTTGTC--TTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTC 374 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || | |||||||| ||||| || || || |||| ||||||||| || Sbjct 373 GACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCGTC 322 >seq198121 Length=2544 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||||||||| || | || Sbjct 453 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 394 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| ||| | || |||||||| Sbjct 393 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 334 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 333 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 274 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 273 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 241 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||||||||| || | || Sbjct 681 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 622 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| ||| | || |||||||| Sbjct 621 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 562 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | ||||| || | |||||||| Sbjct 561 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 502 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| |||||||||||| Sbjct 501 TTACCAGTCAGGGTCTTCACGAAGATCTGCATC 469 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 909 AGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 850 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| ||| | || |||||||| Sbjct 849 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 790 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | ||||| || | |||||||| Sbjct 789 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 730 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 729 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 697 >seq235349 Length=927 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC--GG 34220 || || ||||| | ||||||||| || | || ||| |||| ||||||||||| | Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 |||| || ||| | || |||| ||| ||||| || || || || ||||||||||| | Sbjct 92 ACAG-TG-CGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTG 149 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTC 34338 | || ||||||||| | ||||| ||| | || | || | || | || || Sbjct 150 AGATGCCCTCCTTGTC--TTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTC 207 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || | |||||||| ||||| || || || |||| |||||||||||| Sbjct 208 GACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATC 259 >seq364364 Length=1710 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||||| || | | ||||||| || |||||||| || || ||| | || Sbjct 1199 AGAACCAGGTGTAGAGGAGGTGCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1258 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || ||| ||| ||||||||| ||| | || || || || Sbjct 1259 TCCAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGGGGTATGCCTTCTTTATCC 1318 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | ||| | || | || | | || || || | |||||| | Sbjct 1319 TGGATCTTAGCCTTCACATCCCCAATGGTGTCACTGGGGTCCACCTCTAGGGTGATGCTC 1378 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | | || |||||||||||||| Sbjct 1379 TTGCCAGTCAAGGACTTAACAAAGATCTGCAT 1410 >seq449898 Length=3288 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 || || || |||| ||| || || | || || || || ||||||||||| |||| Sbjct 1237 CCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAA 1296 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285 ||| | || |||||||| ||||| | ||||| || | ||||| || || | Sbjct 1297 GTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATT 1356 Query 34286 CTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 || ||||| || || ||| || |||| || |||| | ||| | || ||| || || Sbjct 1357 CTTTCCTTATCCTGGAT-TTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTC 1415 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||||||| || || ||||| ||||| ||||| ||||||||| Sbjct 1416 GAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATC 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 319760589335360