Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq382080 273 2e-68 seq419922 118 1e-21 seq59382 114 1e-20 seq373797 91.5 1e-13 seq436660 82.4 7e-11 >seq382080 Length=1803 Score = 273 bits (302), Expect = 2e-68 Identities = 538/785 (69%), Gaps = 13/785 (2%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| | ||| ||| || || | ||||||||||| ||| | | Sbjct 580 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 639 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| |||| |||||||| |||||||| || || |||||||| | | ||||||| |||| Sbjct 640 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 699 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAATA 16064 |||| ||||| |||||| | || | | | |||| |||||| ||||| || | Sbjct 700 TAAAGTCAAATGGATTTCCT--ACTCT-GAAAACCTCGCTAAATCCCAGTTCCAGCATAA 756 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||||| |||||||| || || ||||| ||||| || | |||||||| | || | | Sbjct 757 GTCTATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCT 815 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA-TATTAACCGCTTCAATGATTATA 16183 | ||||| | || ||||| | || | | ||| | | || || || | || || || Sbjct 816 TCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT 875 Query 16184 TCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 ||| | ||| | || | ||||||| || || | |||||| ||||| | | |||| Sbjct 876 TCTTTCACT-CTCTGCTCTAACGGATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAAC 934 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 || ||| || || | || || || || || | || || |||||||| ||||| ||||| Sbjct 935 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 994 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 |||| ||||| || | ||| ||||| ||||| || |||| |||||| || ||||| Sbjct 995 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 1054 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAtttttactttctatccat 16420 ||||| ||||| || || | || || || || || || ||| | | ||||| Sbjct 1055 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCC-CAATCCAA 1113 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||||||| ||| || | || ||||| |||| | || || ||| | || ||| Sbjct 1114 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAA 1173 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | | |||||||| |||| ||| ||||| || || || |||||||||||||| ||| Sbjct 1174 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 1233 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 | || || ||||| || || || || ||||| || || | ||||| | || || ||| Sbjct 1234 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACT 1293 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | ||| | || | | |||||| || || || ||||| | ||| |||| || Sbjct 1294 TCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAA 1353 Query 16661 GCAAG 16665 || || Sbjct 1354 GCCAG 1358 >seq419922 Length=2112 Score = 118 bits (130), Expect = 1e-21 Identities = 166/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| | ||| ||| || || | ||||||||||| ||| | | Sbjct 1825 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 1884 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| |||| |||||||| |||||||| || || |||||||| | | ||||||| |||| Sbjct 1885 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 1944 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAATA 16064 |||| ||||| |||||| | || | | | |||| |||||| ||||| || | Sbjct 1945 TAAAGTCAAATGGATTTCCT--ACTCT-GAAAACCTCGCTAAATCCCAGTTCCAGCATAA 2001 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCAT 16113 ||||| |||||||| || || ||||| |||| | || | |||||||| Sbjct 2002 GTCTATTGGCCACAAACTCAATGTACTGCTTCA-TCAAGCGCAGTTCAT 2049 >seq59382 Length=1206 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | | ||| ||||||||| | | | || |||||||| | Sbjct 706 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 765 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||| Sbjct 766 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 825 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||||||||| ||||||| || Sbjct 826 CATAAAATCAAAGGGATTTTCTG 848 >seq373797 Length=7172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || |||||||| || ||||||||||||||| ||| Sbjct 6272 ATCCAAGTTCCACAAGTAATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACAC 6331 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | |||||| | |||||||||||||| Sbjct 6332 AATTCATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAA 6374 >seq436660 Length=1326 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || | Sbjct 98 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 157 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | ||||| | ||| || ||||| Sbjct 158 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457649807911600