Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq500221 1348 0.0 seq244517 1043 0.0 seq551660 104 2e-17 seq273336 87.8 1e-12 >seq500221 Length=3546 Score = 1348 bits (1494), Expect = 0.0 Identities = 1167/1442 (81%), Gaps = 30/1442 (2%) Strand=Plus/Plus Query 107334 AAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTT 107393 ||||| || |||||| ||||| |||||| ||| |||||||| | |||||||| || Sbjct 1132 AAGAAACTCTGCCGGCAGCATCACCTGTGGCTCCTCGGCTGCTACACCTTGCTGGCCATT 1191 Query 107394 GTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCC 107453 || |||||||||| || || || || |||||||| | || ||||||| | ||||| Sbjct 1192 GTGGCTCTGAGACTGTCTCTGAGATTGAAATGTGACTTTGACCACTTGGATTTACAGTCC 1251 Query 107454 AGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCA 107513 ||||| || || || || | ||||||| | | |||||| | ||||||| |||| ||| Sbjct 1252 AGGGAATTTCAAAGCCAACGCTGTAGGAATCTCTTGTACGAGTCCCTGAAGTTGCCGGCA 1311 Query 107514 AAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCC 107573 ||||| || |||||||||| ||| |||| ||||| |||| |||||| ||| | ||||| Sbjct 1312 AAGAGGTCTGTCAACTGTTCGGGGGTCACCCGAGGAGACCGGGAAGCCGTGATTCAGGCT 1371 Query 107574 CTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTC 107633 || ||| | |||||||| || ||| | ||||| ||| |||| | || | ||||| Sbjct 1372 CTTCTAAATAACCTGGAGGTCAAGGAGTAGCGGCAGCCCTTCACAGATGCCGACTACCTT 1431 Query 107634 AACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTG 107693 |||| |||||||||||||||||||| ||| |||| ||||||||||| |||||||||||| Sbjct 1432 CACATGACCAGAGACTGTGAGCGCTT-AAGCCCCAGAGGAAGTTCATCCAGTTCCCACTG 1490 Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 || |||||||||||||||||||| ||||| || || |||||||| || ||||||| |||| Sbjct 1491 AGCAAAGAAGAGCTAGACTTCCCTATTGCATATTCTATGGTGGTTCACGAGAAGACTGAA 1550 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 |||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1551 AACTTTGAGAGGCTGCTGCGAGCTGTGTACGCCCCTCAGAACATATACTGCATCCACGTG 1610 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || ||||||||||| |||||| ||||||| |||||||||||||| || |||||||| Sbjct 1611 GACAGAAAGTCCCCAGAAACTTTCCAAGAGGCCGTCAAGGCCATTATATCATGCTTCCCA 1670 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||| | ||||||||| |||| |||||||||||||||||||||||| ||||| Sbjct 1671 AATGTCTTCCTAGCCAGTAAGCTGGTGAAGGTGGTTTATGCCTCCTGGTCCAGGGTGCAG 1730 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTG 107993 |||||||||||||| |||||||||||||| | |||||||||||| ||||||||||| ||| Sbjct 1731 GCTGACCTGAACTGCATGGAAGACTTGCTTCGGAGCTCAGTGCCCTGGAAGTACTTCCTG 1790 Query 107994 AATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAG 108053 || ||||| ||||||||||| || ||||||||||||| ||||||||||| |||||||||| Sbjct 1791 AACACATGTGGGACAGACTTTCCTATAAAGACCAATGGCGAGATGGTCCAGGCCCTCAAG 1850 Query 108054 ATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGC 108113 | ||||| || |||||||| |||||||| ||| |||| | | |||||| || ||| Sbjct 1851 GTATTGAATGGGAAGAACAGCATGGAGTCAGAGATACCCAGTAGGCTCAAAAAGAACCGC 1910 Query 108114 TGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCT 108173 |||||||| | || | ||||||||||||| || || ||| ||| || |||||||||| Sbjct 1911 TGGAAATATCAATACGTGGTGACAGACACATTGCACATGACCGGCAGGAGGAAGGACCCT 1970 Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233 || ||| |||| ||| |||||||||||||||||||||| | ||||| ||||||| ||| Sbjct 1971 CCTCCTAATAACTTAACCATGTTCACAGGGAATGCCTACATGGTGGCTTCTCGAGACTTC 2030 Query 108234 GTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACC 108293 |||| || |||||| | ||||| ||||||||| |||| |||||||||| ||||||||| Sbjct 2031 ATCCAGCAAGTCTTACAGAACCCCAAATCCCAACAACTGATTGAATGGGTAAAAGACACC 2090 Query 108294 TATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCT 108353 ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2091 TATAGCCCCGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCCTGGATGCCTGGCTCT 2150 Query 108354 GTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413 || || |||||| ||||| | ||||||||||||| |||||||| ||||| |||||| Sbjct 2151 GTACCCTACCACCCTAAGTACGATGTCTCAGACATGACCGCCATCGCAAGGCTGGTCAAG 2210 Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATG--GGGGCGCCTTATGCACCCTGCTCTGGAA 108471 ||| || | ||||||||||| |||| ||| || || | |||||||| |||||||||| Sbjct 2211 TGGGAGGAACACGAGGGAGACGTCA--ATGATGGTGCTTCCTATGCACCTTGCTCTGGAA 2268 Query 108472 TCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACC 108531 |||| | | || | ||||| || |||||||| ||||| |||| |||||| || ||||||| Sbjct 2269 TCCACCAGCGGTCTATCTGTATCTACGGGGCTGGGGATCTGTGCTGGATGCTTCAGAACC 2328 Query 108532 ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAG 108591 ||||||| ||||| |||||||||||||| | ||||| ||||| | || |||||| ||| Sbjct 2329 ATCACCTGTTGGCCAACAAGTTTGACCCCAATGTGGACGATAATGCTCTTCAGTGCCTAG 2388 Query 108592 AAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGTGGGCCA 108651 |||||||||||||||| ||||||||||| ||||| ||||| |||| |||||| | | || Sbjct 2389 AAGAGTACCTACGTCACAAGGCCATCTACGGGACAGAACTCTGAGATGCACTCT--GACA 2446 Query 108652 GGGA-CTGTGC---CA------ACATGCCCAGGGCGTACTGGTACTGTG----------- 108690 || | ||||| || |||||||||| | | ||| || || Sbjct 2447 GGAATATGTGCAGACATCGCAGACATGCCCAGAACTTGCTGAGGCTATGGAGGGGGTAGA 2506 Query 108691 -TGGGGTGGGG-GACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 || ||||||| ||| |||||| || |||||| ||||||||||||| | ||||||||||| Sbjct 2507 ATGAGGTGGGGAGACCAGGGCTTTGAAATCCAGGGCATCCCCCAGGATAAGAGGGCTGCT 2566 Query 108749 TT 108750 || Sbjct 2567 TT 2568 >seq244517 Length=1180 Score = 1043 bits (1156), Expect = 0.0 Identities = 928/1154 (80%), Gaps = 14/1154 (1%) Strand=Plus/Plus Query 107143 TAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC--T 107200 |||||||| | ||||||| | ||||| | | |||| || ||| ||| || || | Sbjct 33 TAGGCAGGTCCGTTCTGAGGACACTTGTCCAGATAAGAAATGTATTTTTGCCTTCTAGGT 92 Query 107201 CTGGAGTTGAACTTGATGTTC-TGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCA 107259 ||||||||||||||| | ||| ||| ||||||||||| |||||||||||||||||||| Sbjct 93 CTGGAGTTGAACTTGCTATTCCTGG--TAGTTTGTAATCGAAGGCATTTTGTTCTGTCCA 150 Query 107260 AGGA---TCTCCTCCTCCACCTTGCCT--GTGCCCAAACTCTCCTGATCTCCCATCCCAT 107314 || | | || |||||| | ||| ||||| | ||||| || ||| | | |||| Sbjct 151 AGTACTCTGTCTTCCTCCTCTCCTCCTCGGTGCC-ACACTCTACTTGTCTTCTCTTCCAT 209 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 ||||||| | ||| ||||| || |||||| ||||| |||||| ||| ||||| Sbjct 210 GAAGATGCTTCAGTGCAAGAAA---CTCTGCCGGCAGCATCACCTGTGGATCCTCGGCTG 266 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 ||| | |||||||| |||| |||||||||| || || || || |||||||| | || Sbjct 267 CTACACCTTGCTGGCCATTGTGGCTCTGAGACTGTCTCTGAGATTGAAATGTGACTTTGA 326 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 ||||||| | |||||||||| || || || || | ||||||| | | |||||||| Sbjct 327 CCACTTGGATTTACAGTCCAGGGAATTTCAAAGCCAACGCTGTAGGAATCTCTTGTACAA 386 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 ||||||| |||| |||||||| || |||||||||| ||| |||| ||||| ||||| Sbjct 387 GTCCCTGAAGTTGCCGGCAAAGAGGTCTGTCAACTGTTCGGGGGTCACCCGAGGAGACCA 446 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 |||||| ||| | ||||| || ||| | |||||||| || ||| | |||||| ||| | Sbjct 447 GGAAGCCGTGATTCAGGCTCTTCTAAATAACCTGGAGGTCAAGGAGAAGCGGCAGCCCTT 506 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | || | ||||| |||| |||||||||||||||||||| |||||||| ||||| Sbjct 507 CACAGATGCCGACTACCTTCACATGACCAGAGACTGTGAGCGCTTTAAGGCCCAGAGGAA 566 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 |||||| |||||||||||||| |||||||||||||||||||| ||||| || || ||||| Sbjct 567 GTTCATCCAGTTCCCACTGAGCAAAGAAGAGCTAGACTTCCCTATTGCATATTCTATGGT 626 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 ||| || |||||||||||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct 627 GGTTCACGAGAAGATTGAAAACTTTGAGAGGCTGCTGCGAGCTGTGTACGCCCCTCAGAA 686 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| |||||||||| ||||||||||| |||||| ||||||| |||||||| Sbjct 687 CATATACTGCATCCACGTGGACAGAAAGTCCCCAGAAACTTTCCAAGAGGCAGTCAAGGC 746 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||| || |||||||| ||||||||| | ||||||||| |||| |||||||||||| Sbjct 747 CATTATATCATGCTTCCCAAATGTCTTCCTAGCCAGTAAGCTGGTGAAGGTGGTTTATGC 806 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| ||||| |||||||||||||| |||||||||||||| | ||||||||| Sbjct 807 CTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGGAAGACTTGCTTCGGAGCTCAGT 866 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||| ||| Sbjct 867 GCCCTGGAAGTACTTCCTGAACACATGTGGGACAGACTTTCCTATAAAGACCAATGGCGA 926 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| |||||||||| | ||||| || |||||||| |||||||| ||| |||| Sbjct 927 GATGGTCCAGGCCCTCAAGGTATTGAATGGGAAGAACAGCATGGAGTCAGAGATACCCAG 986 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTAC 108154 | | |||||| || ||||||||||| | || | ||||||||||||| || || || Sbjct 987 TAGGCTCAAAAAGAACCGCTGGAAATATCAATACGTGGTGACAGACACATTGCACATGAC 1046 Query 108155 CAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 | ||| || |||||||||||| ||| |||| ||| |||||||||||||||||||||| | Sbjct 1047 CGGCAGGAGGAAGGACCCTCCTCCTAATAACTTAACCATGTTCACAGGGAATGCCTACAT 1106 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 ||||| ||||||| ||| |||| || |||||| | ||||| ||||||||| |||| | Sbjct 1107 GGTGGCTTCTCGAGACTTCATCCAGCAAGTCTTACAGAACCCCAAATCCCAACAACTGAT 1166 Query 108275 TGAATGGGTCAAAG 108288 ||||||||| |||| Sbjct 1167 TGAATGGGTAAAAG 1180 >seq551660 Length=10507 Score = 104 bits (114), Expect = 2e-17 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||||||| || || || || || || || || ||||| ||| | || Sbjct 3635 CCCCTTAGTGAAGAAGAGGCGGAGTTTCCGATCGCATATTCTATCGTGGTTCATCACAAA 3576 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || |||||||| | || || | Sbjct 3575 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 3516 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| ||||| ||| | ||| || ||||| | ||| | ||||| Sbjct 3515 CACGTGGACAGAAAGTCAGAGGAGTCCTTCTTAGCTGCGGTGACCAGCATCACGTCCTGT 3456 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 |||| || |||||| |||||||| |||||| ||||||||||| || ||| || Sbjct 3455 TTCCGTAACGTCTTCGTGGCCAGTCAGTTGGAGAGCGTGGTTTATGCATCGTGGAGTCGA 3396 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || || || || || ||||| ||| ||||| Sbjct 3395 GTTCAGGCCGATCTCAACTGCATGAAAGAC 3366 >seq273336 Length=2339 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| |||| | |||||||| ||||||||| |||| || || | | || |||| Sbjct 1504 ATGCCCC--AGAATGTCTACTGTGTGCACGTGGATAAGAAGGCCACAAATGCATTTAAAG 1561 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || || | | ||| | ||||||||| |||| || |||| ||| || | Sbjct 1562 ATGCAGTGGAA-CAGTTACTGAGCTGCTTCCCAAATGCATTTCTGGCTTCCAAGATGCTG 1620 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 || ||||| |||| | ||||| | || || |||||||||||||||||||| || Sbjct 1621 CCTGTGGTCTATGGTGGCATCTCCAGGCTCCAGGCGGACCTGAACTGTATGGAAGATCTG 1680 Query 107961 CTCCAGAGCTC---AGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 | | ||| || || ||||||||| | || || || || ||| |||||||||| Sbjct 1681 GT---GGCCTCCCAGGTCCCCTGGAAGTACCTCCTCAACACCTGTGGGCAAGACTTCCCC 1737 Query 108018 ATAAAGACCAA 108028 | || ||||| Sbjct 1738 CTGAAAACCAA 1748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344699128166844