Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq198121 123 2e-23 seq345138 120 2e-22 seq713515 96.9 3e-15 seq335148 95.1 9e-15 seq235349 95.1 9e-15 seq416377 91.5 1e-13 >seq198121 Length=2544 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT- 45185 ||||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || | Sbjct 1137 TACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 1078 Query 45186 CCAGTTGTTTTCCGGCGAATATCAA-CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||||| ||||| || ||||| || ||| ||||||||||| | ||| |||||||| Sbjct 1077 CCAGCTGTTTCCCGGCAAAGATCAACCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCT 1018 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | | |||| | ||| ||||| | |||||| ||| Sbjct 1017 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTAATGGTC 958 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || |||||||| ||||| ||||| Sbjct 957 TTACCAGTAAGGGTCTTCACGAAGATCTGCAT 926 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 450 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 391 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | || |||||||| Sbjct 390 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 331 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 330 ATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 271 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 270 CCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 906 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 847 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | || |||||||| Sbjct 846 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 787 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 786 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 727 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 726 CCAGTCAGGGTCTTCACGAAGATCTGCAT 698 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 678 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 619 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | || |||||||| Sbjct 618 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 559 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || ||||| Sbjct 558 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTA 499 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 498 CCAGTCAGGGTCTTCACGAAGATCTGCAT 470 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | || |||||||| || ||| ||||| ||||||||||| | Sbjct 1382 CCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAC 1323 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||||||||| || || || ||||||| ||| ||||| ||||| Sbjct 1322 AGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1263 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| || || ||| || | | | | |||| | ||| ||| Sbjct 1262 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 1203 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 1202 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 1156 >seq345138 Length=2957 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| ||| || ||| ||| ||||| ||||||||||| Sbjct 2314 GCCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 2373 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || |||| ||||| ||||| ||||||| ||||| ||||| || || Sbjct 2374 CAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGG 2433 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||||| ||| || | | | | |||| | ||| || Sbjct 2434 GATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 2493 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||| || ||||||||| |||| |||||||| ||||| ||||| || Sbjct 2494 CTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTT 2544 >seq713515 Length=817 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||||||||||||||| Sbjct 412 GCCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGA 471 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| || || ||||| Sbjct 472 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGG 531 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| || || ||| || | | | | |||| | |||||| Sbjct 532 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 591 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 592 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 >seq335148 Length=7748 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||| ||||| ||||| ||||| || ||| | || ||| Sbjct 7097 ACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCTTCC 7156 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| ||||||| ||||| |||| || || | ||||||||||| Sbjct 7157 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTAGGTGGGATGCCCTCCTTGTCTTGG 7216 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | |||| | | |||| | ||| || |||||| Sbjct 7217 ATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACCTTGAGGGTGATGGTCTTG 7276 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| |||||||| ||||| ||||| || Sbjct 7277 CCCGTCAGGGTCTTCACGAAGATCTGCATCTT 7308 >seq235349 Length=927 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| ||||| ||| ||| |||| ||||||||||| Sbjct 31 GCCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGA 90 Query 45169 --CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 |||| ||| | || ||||| ||||| || || ||||||| |||| |||||||| Sbjct 91 GACAGT--GCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGT 148 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 | | ||||||||||| |||| ||| || | | | | |||| | ||| Sbjct 149 GAGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCG 208 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| | ||| || |||||||| ||||| ||||||| ||||| ||||| || Sbjct 209 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 261 >seq416377 Length=912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT--CAGTTGGCGATCGTCGT 45185 |||| ||| || ||| ||| |||| ||||||||||| |||| ||| | || | Sbjct 531 ACCAGGTGGAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGT--GCGGCCATCTT 474 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| ||||| || || ||||||| |||| |||||||| | | ||||||||||| Sbjct 473 CCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTT 414 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 |||| ||| || | | | | |||| | ||| ||||| | ||| || |||| Sbjct 413 GGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACCTCGAGGGTGATGGTCT 354 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT-GTTGCCTC 45344 |||| ||||| ||||||| ||||| ||| | ||||||| Sbjct 353 TGCCTGTCAGGGTCTTCATGAAGATCTGCGTCTTTGCCTC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391025773771126