Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq382080 257 2e-63 seq419922 113 4e-20 seq101110 96.9 3e-15 seq749787 89.7 5e-13 seq436660 87.8 2e-12 seq59382 82.4 7e-11 >seq382080 Length=1803 Score = 257 bits (284), Expect = 2e-63 Identities = 530/781 (68%), Gaps = 7/781 (1%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 580 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 639 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 640 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 699 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 700 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 759 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 ||| || | |||||||| || || ||| || | || ||||| | || || || | Sbjct 760 TATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 818 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 14155 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 819 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 877 Query 14156 GT--AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 | | | | | || | ||| | | || ||||| || || | | |||| || Sbjct 878 TTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAACAT 936 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||||| Sbjct 937 TACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCA 996 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 || ||||| || | ||| ||||| || || || || | |||||| ||||| || | Sbjct 997 GTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTCTA 1056 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCATTTT 14392 |||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 1057 CTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGC 1116 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 ||||| || | || || || | | || ||| |||||||| ||| | || ||| | Sbjct 1117 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAAAAT 1176 Query 14453 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 ||| | ||||| | | | |||||| || |||||||| || |||||||||||||| || Sbjct 1177 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGT 1236 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 ||||||||||| || || || || ||||| ||||| | ||||||| || || ||| Sbjct 1237 ATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACTTCT 1296 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 | ||||| || ||| |||||||| || || ||||||| ||| |||| || ||| Sbjct 1297 TGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAGCC 1356 Query 14633 A 14633 | Sbjct 1357 A 1357 >seq419922 Length=2112 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 1825 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 1884 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 1885 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 1944 Query 13977 TAAAATCAAATGGATTT 13993 |||| |||||||||||| Sbjct 1945 TAAAGTCAAATGGATTT 1961 >seq101110 Length=3331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1597 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 1538 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 1537 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1502 >seq749787 Length=1786 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||| |||| || |||||||| |||| ||| || | | |||| |||| | || | Sbjct 1400 CATCCAAACCTTGAACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTG 1459 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | ||| || ||| |||||| | ||| | | ||| ||| ||||| | || ||| | Sbjct 1460 CAATTCGGTCACCTTTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACAC 1519 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATA 11820 ||| || || ||||||||||||||||| || || |||||| ||||| | | | | Sbjct 1520 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTG 1579 Query 11821 ACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACA 11857 | | ||||| | ||| |||| || ||||||||| Sbjct 1580 CAGCCAAGCCAGAACATGGAGCTACTCTTCCATAACA 1616 >seq436660 Length=1326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 114 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 173 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 174 GAAGCCATAGAAACAGCGGGCTTCTG 199 >seq59382 Length=1206 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 |||||||| |||| || | ||| |||||||| || || | | ||||| | | Sbjct 707 TAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCT-GCCATAACTGCAAAACG 765 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || ||||| ||| |||||||| || ||||| ||||| | ||| || ||||| Sbjct 766 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 825 Query 13975 CATAAAATCAAATGGATTT 13993 |||||||||||| |||||| Sbjct 826 CATAAAATCAAAGGGATTT 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477274905704080