Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq198121 95.1 9e-15 seq742764 89.7 4e-13 seq713515 89.7 4e-13 seq449898 86.0 5e-12 seq377023 86.0 5e-12 seq345138 84.2 2e-11 seq350439 82.4 6e-11 seq158964 82.4 6e-11 >seq198121 Length=2544 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| || || | |||| Sbjct 453 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 394 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || ||| | ||||||||| || Sbjct 393 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 334 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| || | ||||||| | Sbjct 333 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 274 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 273 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| || || | |||| Sbjct 681 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 622 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || ||| | ||||||||| || Sbjct 621 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 562 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| |||| ||||||| | Sbjct 561 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 502 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 501 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 909 AGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 850 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || ||| | ||||||||| || Sbjct 849 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 790 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| |||| ||||||| | Sbjct 789 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 730 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 729 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || ||||| ||||| || ||||||||||| | || || | |||| Sbjct 1367 AGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1308 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||| || ||| |||| | || || || || || | |||||||| || Sbjct 1307 TCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCT 1248 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| |||| ||||||| | Sbjct 1247 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1188 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 1187 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 1156 >seq742764 Length=2195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| || || ||||| ||||||||||| | || || | | ||||||||| ||| Sbjct 1600 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCTTCCAACTGT 1541 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || |||||||| ||||| || | ||||||||| | |||| | Sbjct 1540 TTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCCTGGATTT-T 1482 Query 18243 TGC-TTGACCTGTGCAACAGTGT-CACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 || || || | | | | || | || ||| || || | ||||| | | || || | Sbjct 1481 GGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGAGGGTCTTCCCTG 1422 Query 18301 TCAATGTTTTTACAAAAATTTGCATTTT 18328 | | |||||||||||||| ||||| || Sbjct 1421 TAAGGGTTTTTACAAAAATCTGCATCTT 1394 >seq713515 Length=817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| |||||||||||||| | | || | |||| Sbjct 428 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 487 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| || | |||||| ||||| Sbjct 488 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 547 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| || | ||||||| | Sbjct 548 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 607 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 608 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 >seq449898 Length=3288 Score = 86.0 bits (94), Expect = 5e-12 Identities = 170/247 (69%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 18085 TTTCTTTTTGTTATCCTCCCC--GTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG 18142 |||||||| ||| | || || | ||||| | || | ||||| || || || ||||| Sbjct 1219 TTTCTTTTC-TTAGCATCACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTG 1277 Query 18143 AATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCT 18202 |||||||||||| | || || | ||||||||| |||||||| | | | || ||||| Sbjct 1278 AATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCT 1337 Query 18203 TTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAG 18261 ||| ||||| || | | ||||||||| |||| | |||| || | | | | | Sbjct 1338 TTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGATTT-TGGCTTTTACATTTTCTATTG 1396 Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 | || || || || | ||||||| | || || || | |||||||||||||| | Sbjct 1397 TATCCGGCGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCT 1456 Query 18322 GCATTTT 18328 |||| || Sbjct 1457 GCATCTT 1463 >seq377023 Length=3771 Score = 86.0 bits (94), Expect = 5e-12 Identities = 169/247 (68%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTAT---CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG 18142 || ||||| |||| || || || | ||| | || | |||||| || || || ||||| Sbjct 1645 TTTTTTTTCTTATGCACCACCACGAAATCTCAACACAAGGTGAAGCGTGGACTCCTTTTG 1704 Query 18143 AATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCT 18202 ||||||||||| | || || | | ||||||||| |||||||| ||| | || ||||| Sbjct 1705 GATGTTGTAGTCAGACAAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCT 1764 Query 18203 TTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAG 18261 ||| ||||| | | ||||||||||| |||| | || || || | | | | | Sbjct 1765 TTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATTT-TGGCTTTTACATTTTCTATTG 1823 Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 | || | || | | ||||||| | || || || | |||||||||||||| | Sbjct 1824 TATCCGATAGTTCAACCCCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCT 1883 Query 18322 GCATTTT 18328 |||| || Sbjct 1884 GCATCTT 1890 >seq345138 Length=2957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | ||| Sbjct 2330 AGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCATCC 2389 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| ||| | || || | || || || ||| | ||| ||||| || Sbjct 2390 TCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 2449 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | | | ||||||| ||||||| || | ||||||| | Sbjct 2450 TGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2509 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| ||| || || || || || ||||| ||| Sbjct 2510 TTGCCCATCAGGGTCTTCACGAAGATCTGCATCTTT 2545 >seq350439 Length=8302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||| ||||||||||| | || || | | ||||||||| ||| Sbjct 6611 TGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACTCCCATCTTCCAACTGT 6552 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| | || |||||||| ||||| || | ||||||||||| Sbjct 6551 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 6502 >seq158964 Length=5733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | |||||||| || || ||||| |||| |||||| | ||| Sbjct 4728 AGTCTCAGCACAAGATGAAGTGTGGACTCCTTTTGGATGTCGTAGTCAGAGTATGT---- 4783 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||| || ||||| ||| | || |||||||| ||||| || | |||||| Sbjct 4784 CCATCTTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 4843 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | | | || || || || || | ||| Sbjct 4844 TTATCCTGAATTT-TGGCTTTTACATTTTCTATTGTATCCGATGGTTCAACCTCGAGGGT 4902 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| | || || || | |||||||| ||||| ||||| || Sbjct 4903 GATGGTCTTCCCTGTGAGGGTTTTTACTAAAATCTGCATCTT 4944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375455814805470