Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq631619 338 6e-88 seq382080 212 6e-50 seq517911 107 2e-18 seq777700 95.1 1e-14 seq158094 86.0 6e-12 seq826513 84.2 2e-11 >seq631619 Length=7703 Score = 338 bits (374), Expect = 6e-88 Identities = 1197/1848 (65%), Gaps = 33/1848 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 || ||||| | ||| | | |||| || | ||||||||| ||||| || | | || Sbjct 1544 ATTGGATTAGCTGCTGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAATTCTGCTTC 1603 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || || || || ||||||||||| ||||| | || |||| | | | |||| || || Sbjct 1604 CAGCCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATATTC 1663 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | || ||||||||||| || || | | |||| |||||| |||| | | || | ||| Sbjct 1664 AAAGACTGACTTTGATCAATGAAAGTATCTCTCTCGGCTACCATCTTGAGAACAGTTTTC 1723 Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA-ATG 37043 || || || ||||| | || ||||| | || || | | ||| | | ||| ||| Sbjct 1724 TGGGAGATTTCCCACATAGTCTTATAAAGTTCCTTCAGGTCATCAGTAATTTCTGGTATG 1783 Query 37044 TT--GAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTATTCCACATAT 37099 | | ||||| ||||| ||| || | || ||| || || || | |||||||| | Sbjct 1784 CTCTGGATAGAGCCATTGCATGCAATA--ATCTGATTTTTCATCTCTTCATTCCACA-AG 1840 Query 37100 TTCTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAAT 37158 | ||| | || | ||| ||| || ||| |||||||||| |||||| ||||| || || Sbjct 1841 CCCCACTCAGTAAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCTCCTGACAAG 1900 Query 37159 ACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATT 37218 ||||| | | || || ||||| ||||| |||||||||||||||||||| | || || Sbjct 1901 ACTCTGCGAATGTAGATGTTGCTGGTATAAGGTTCAATGGACTCATTATTCCCCAAGATC 1960 Query 37219 TGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTA 37278 |||| || | ||||||| |||||| || || || | || ||||| | |||| | Sbjct 1961 TGAGCAGTTGCAGCAGTAGTCATTGGGGCAATAAGTAAACTGTTTCTTACACCATACTTT 2020 Query 37279 TTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACA 37336 ||| | | || || ||||| ||||| | ||||| || || | || ||||| Sbjct 2021 GCAATCTTGTCCTTGAGAAGTTTCCAGTCCCACAGGTCTGTGGGAGTAACATT--CCACA 2078 Query 37337 TATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGT 37396 ||||| || ||||| |||| || ||||||| | | ||| || || || || || | Sbjct 2079 CGTCATACTGAAGAATTTCTTTGCTTACTGGAGAGCCCTCATAGGTTTCCTATGGACCAT 2138 Query 37397 AAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTT 37456 | ||| || || || || || | ||| | || ||||||| || |||| || |||| Sbjct 2139 ACTCTTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTGAAAGATTT 2198 Query 37457 GTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACAT 37516 | |||| | || | | ||| || || |||| ||| | || || ||||| || Sbjct 2199 GCTTATTCAGTAACTGGACCTCTGGACTTTCAAATGGATATCTCATCAAGATAAAAGCAA 2258 Query 37517 CAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATT 37576 |||||| | | ||||| || || || ||||| ||| ||||| ||| | | | Sbjct 2259 CAGCCAGAACTTGAACCCCAATTCCAATGGGGTGATGGCGTTTATTTGATACGTATGCCT 2318 Query 37577 CTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCG 37636 || | || || || || ||| || |||||||| | ||| ||| | | || | Sbjct 2319 CTGGAATAGGGTAGTAGTTTCTATTAATAATTTTATTCAAGTTTCGAACAATGACTTCAG 2378 Query 37637 TAATTATTCTCAACTTGTCGAA--CATAAATACGTTATTAT-TAACAAATTTACTCAACG 37693 | | | || ||| | || | || | ||| | || | ||| | || ||| | Sbjct 2379 TGACTTCAGCCAGCTTCTTAAAGTCGTACGTGTGTTCTGATGTGACATACATATTCAGGG 2438 Query 37694 AAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTG 37753 | || | | ||||| || ||||| || |||| | | || | | || || |||| Sbjct 2439 CCAGGGAAGCCAAGTTACAAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATTTCTG 2498 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 | || || || || || | |||| ||||| || || ||| || | |||||| | Sbjct 2499 TGCACAGGTTGCTGCATTTGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTACAGG 2558 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 ||| ||| || || || || || || | ||| | |||| ||| ||||||| | || Sbjct 2559 AATTTTTGTAGAGCATGTA-GGGGTGTCAGTCTCTGTCTGAGACTCAATAATAGCATACC 2617 Query 37874 ATAAACTTCT-TGCTTTAACGATCGCTTT---AAtttttttCTTTGTTTCGTATTCTATA 37929 | || || || ||||| || | |||| ||| | || | || || | | | Sbjct 2618 A-AAGCTGCTGAGCTTTCACAA---CTTTGCGAATGTGACCCTGCTTCTCATACTTTTCA 2673 Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989 |||| || | ||| || | ||||| || || | || ||||| || ||||||| Sbjct 2674 TATAGCTTCTCAAATTCTTCTCCCCAAACTTCATCCAGGCCAGGACACTCATTTGGACAC 2733 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || | |||||| || | || |||| || | || ||| || | ||| | | ||| | Sbjct 2734 ATCAAAGACCAGTCCTGATTAGTTTCCACCCATTTCATGAAGAGATCTGAAATCCAAAGG 2793 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 ||| || | ||| | | | |||||| || ||| ||||| |||| ||| Sbjct 2794 GCAAAGAAAAGATCCCTCGCATACTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGA 2853 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTA 38169 || || || || || ||| | |||| | ||||| | | ||| || | || Sbjct 2854 AACTCAAAGATGTCTAAATGCTAAGGTTTCAGGTAAATAGCAAATGCCCCAAGAAGCTTG 2913 Query 38170 TCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATA 38229 | || || |||| | |||| | |||| ||| | |||| ||| | ||| ||||| | Sbjct 2914 TTTCCACCTTGATCTACGTATCGAGCTGTATTACTGTATACTCTCAGCATTGGTACAAGG 2973 Query 38230 CCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATC 38289 ||||| || ||||| || | || | || || | || |||| || ||| ||| | Sbjct 2974 CCATTGGAATTGCCATTAGTCCCAGCAATGTAGCTGCCAGTAGCCCGAATACAACTCACA 3033 Query 38290 GACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAAT 38349 | | || ||||| || ||| || || || ||||| ||||| |||| |||||| | Sbjct 3034 GCAACACCAATTCCTCCAGCAGACTTAGAAATCAAAGCACATTGCTTTAGAGTATCATAA 3093 Query 38350 ATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACA-TTTGAGGCAA 38408 || ||||| || |||||||| || || || | ||| | |||| | || ||| | Sbjct 3094 ATCCCTTCAATGCTGTCATCTTTCATGCTCAGAAGGAAATAGGTAGAAAGTTCTGGGCGA 3153 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 | | || || || || || | || ||||| ||||| ||||||| || || || | | Sbjct 3154 TTG-GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGAAAGAAG 3212 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 |||| |||||| ||| || |||| || || | |||||| || | |||||||||||| Sbjct 3213 GTTATCTGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACCCTCAT 3272 Query 38529 TAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATACGATTT 38585 | ||| ||||| ||||| || | ||| | || || || | | ||| || | Sbjct 3273 CAACATGTGTTGCGGTCTGTCAGCCACTTTCCCACTAATC---TTCAACAAATAGGACTG 3329 Query 38586 TTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || |||| || | ||||||||| | || ||| |||||| ||| || Sbjct 3330 CTCCAATGCCTTAAAGCCAAAATAATTGTAAGAAAAATCTCGATCATA 3377 >seq382080 Length=1803 Score = 212 bits (234), Expect = 6e-50 Identities = 503/749 (67%), Gaps = 26/749 (3%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388 || |||||| | ||||| |||| |||| || | || || || |||||||| ||||| || Sbjct 627 ACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTTCCAG 685 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 | | |||| |||||||||| ||| ||||| ||| |||| || | | | || | Sbjct 686 TAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAG 745 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 || | | ||||| || || || || || ||||| ||| || | || ||||| Sbjct 746 TTCCAGCATAAGTCTATTGGCCACAAACTCAATGTACTGCTTCATCAAGCG-CAGTTCAT 804 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTA-TATTAACCGCAT 11567 | || || | ||| || | ||| |||| | ||||||| ||| | | || || |||| Sbjct 805 CTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCAT 864 Query 11568 CAATGATTATCGACGT-TATAACTTCCTTAGATGGTGGAT---GTAATAAATGTTTAAAC 11623 |||| || || | | | ||| || | |||| ||| | ||||| ||| Sbjct 865 ---TGATAAT-GATTTCTTTCACTCTCTGCTCTAACGGATAGTGTAGCAGGTGTTTGAAC 920 Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683 || | | |||| || ||| ||||||| || ||||| || || |||||||| |||||| Sbjct 921 ATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAAT 980 Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743 || | || ||||||| || ||||| || | ||| ||||| ||||| || |||| | Sbjct 981 GTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTA 1040 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA-------TACCTT 11796 ||||| ||||| || || |||||||| ||||| | ||||||||| | | || Sbjct 1041 AAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTT 1100 Query 11797 GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTC 11856 || | | ||||| ||||||||| || ||||| || || || ||| ||||| Sbjct 1101 GTCCCCA---ATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTC 1157 Query 11857 TATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATTAAT 11914 || || | || ||| ||| ||||| | |||| | | || || || || | Sbjct 1158 AATGGCACTGAAGAAAA--ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGG 1215 Query 11915 AAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT 11974 |||||||||||||| ||| | || |||||||| || ||||| || ||||| ||||| || Sbjct 1216 AAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGG 1275 Query 11975 GCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCA 12034 || |||| | || || || ||||| ||| | | || |||||||| || ||| Sbjct 1276 GCTTCTGTAATGTGAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 1335 Query 12035 TCACTAGATGCAAAAAATGCTAGTATATG 12063 |||| | | |||| || || || | ||| Sbjct 1336 TCACATGCTACAAAGAAAGCCAGAACATG 1364 >seq517911 Length=2699 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | ||| ||||| | |||| || || Sbjct 1250 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 1309 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| || Sbjct 1310 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1369 Query 11774 ACTACTCTTTCTCC 11787 || |||||||| || Sbjct 1370 ACAACTCTTTCCCC 1383 >seq777700 Length=1660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || ||||||||||| ||||| | || |||| | | | |||| || Sbjct 1253 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1312 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || ||||||||||| || || |||||||| ||||||||||| | | || | || Sbjct 1313 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 1372 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | || || || ||||| || || ||||| | ||| || Sbjct 1373 TCTGGGAGATTTCCCACACAGTCTTATAAAGTTGCTT 1409 >seq158094 Length=1115 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 38392 CTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 ||||| | ||| || | || | || || || || || | || ||||| ||||| |||| Sbjct 872 CTAGAAAGTTGTGGGCGATTG-GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGAGTGAA 814 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 ||| || || || | | ||||||||||| ||| || |||| || || | |||||| Sbjct 813 CCACTTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCGATGTCTTCTTTGTGAAT 754 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | |||||||||||| | ||| ||||| |||||||| Sbjct 753 CCCCACAGATACCCTCATCAACATGTGTTGCGGTCTTTC 715 >seq826513 Length=1995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||||| || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 640 ATCTCTTATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 699 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||||| ||| Sbjct 700 AATTTGAAAGCCATAGAAACAACGAGCCTCTGGAATTTGTACCTCC 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463599397900640