Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq345281 136 3e-27 seq242529 98.7 8e-16 seq489007 96.9 3e-15 seq675419 82.4 6e-11 >seq345281 Length=2749 Score = 136 bits (150), Expect = 3e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || ||||||||||| | ||||||||||| ||||||||||||||||| || || Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||| ||||| || | | || || ||||| || |||||| | | ||| || Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAGAGGGAGATC 2462 >seq242529 Length=4194 Score = 98.7 bits (108), Expect = 8e-16 Identities = 187/274 (68%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || || | || ||||| || ||||| | || ||||| | |||||| Sbjct 1107 GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 1166 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || | ||||||||| | | | ||| || ||||||||||| ||||||||||| Sbjct 1167 CTGAGAACTAAATTAATTCTATCCTTTAAAGGCCGATTCTTTTCAGGAATGGAAAACCAG 1226 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || ||| | || |||| | || || | || | |||||| Sbjct 1227 GTCTTCCTACCCATAATCACGGTATTTTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 1286 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCA 3208 |||| |||||| | | ||| || || || ||||| |||| ||||| || || Sbjct 1287 CTCTGGAAATACTTAAATTCATTCCTGAGTGGAGGCCAGGGCAGGTCCCCGTTCTTGCCG 1346 Query 3209 ATTCCTAATTGTTCATCAACTGCAACGATGCAGT 3242 || || | || | | || || |||||||||| Sbjct 1347 ATGCCCATTTCTGGGAC-ACAGCGACGATGCAGT 1379 >seq489007 Length=952 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || | | || |||||||| ||||| | || ||||| | |||||| Sbjct 698 GCATCATCCAGACTCTTGGCAAGAAAGTGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 757 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || || ||||||||||| | ||| || ||||||||||| ||||||||||| Sbjct 758 CTGAGAACAA-ATTAATTCTGTCTTTTAAAGGCCGATTCTTTTCAGGAATGGAAAACCAG 816 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || | ||| | || |||| | || || | || | |||||| Sbjct 817 GTCTTCCTACCCATAATCACGATATTTTGTTTACCTTCTACTGAAGAGGTTGTGGTCATT 876 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| ||||| | | ||| || || || ||||| |||| Sbjct 877 CTCTGGAAATAATTAAGTTCATTCCTGAGCGGAGGCCAGGGCA 919 >seq675419 Length=1260 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 2969 GCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTG 3028 ||||| || || || | || ||||| || ||||| | || ||||| | |||||| Sbjct 966 GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTA 907 Query 3029 CTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCAT 3088 || | || | ||||||||| | | | ||| | ||||||||||| |||||||| || Sbjct 906 CTGAGAACTAAATTAATTCTATCCTTTAAAGGCTGATTCTTTTCAGGAATGGAAAATCAG 847 Query 3089 GTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATT 3148 || | | |||||||| || ||| | || |||| | || || | | | |||||| Sbjct 846 GTCTTCCTACCCATAATCACGGTATTTTGTTTACCTTCTACTGAAGAAATTGTGGTCATT 787 Query 3149 TTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| |||||| | | ||| || || || ||||| |||| Sbjct 786 CTCTGGAAATACTTAAATTCATTCCTGAGCAGAGGCCAGGGCA 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423391398398880