Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq713515 109 5e-19 seq270171 109 5e-19 seq449898 100 3e-16 seq667311 98.7 1e-15 seq808566 96.9 3e-15 seq449207 96.9 3e-15 seq350439 96.9 3e-15 seq658004 91.5 1e-13 seq629906 91.5 1e-13 seq839444 89.7 5e-13 seq742764 89.7 5e-13 seq390795 87.8 2e-12 seq309453 87.8 2e-12 >seq713515 Length=817 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| |||||||| || || | |||| ||||| ||||| || || Sbjct 443 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 502 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||||| ||||| ||||||||||| || ||| || || Sbjct 503 GCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 562 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 563 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 622 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 623 TTCACGAAGATCTGCATA 640 >seq270171 Length=3188 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| ||||| || || || || | | ||||| | |||| Sbjct 2521 TGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGT 2462 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| ||||| || ||||| || || |||||| Sbjct 2461 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 2402 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 2401 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 2342 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 2341 AGGGTTTTTACGAAAATCTGCAT 2319 >seq449898 Length=3288 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||||||||| || || || || | | ||||| | |||| Sbjct 1258 TGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGT 1317 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||| | | ||||| | ||||||||| ||||| || | ||| || || |||||| Sbjct 1318 TTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGATTTTG 1377 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 1378 GCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 1437 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | |||||||| || || ||||| Sbjct 1438 AGGGTTTTTACAAAAATCTGCAT 1460 >seq667311 Length=5630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| ||||| || || || || | | ||||| | |||| Sbjct 4171 TGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGT 4230 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| | ||| || |||| || || |||||| Sbjct 4231 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGAAGGAATTTCTTCCTTATCCTGGATTTTG 4290 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 4291 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 4350 Query 139742 AACGTTTTTACGAATATTTGCA 139763 | ||||||||||| || |||| Sbjct 4351 AGGGTTTTTACGAAAATCTGCA 4372 >seq808566 Length=7867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||| ||||| || || || || | | ||||| |||||| Sbjct 1316 TGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTGT 1257 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| ||||| || || | || || |||||| Sbjct 1256 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTTG 1197 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 1196 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 1137 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 1136 AGGGTTTTTACGAAAATCTGCAT 1114 >seq449207 Length=1366 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||| ||||| || || || || | | ||||| |||||| Sbjct 331 TGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTGT 272 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| ||||| || || | || || |||||| Sbjct 271 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTTG 212 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 211 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 152 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 151 AGGGTTTTTACGAAAATCTGCAT 129 >seq350439 Length=8302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 139558 TAAG-TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGA 139616 |||| |||| ||| ||||| ||||| ||||| || || || || ||| ||||| | Sbjct 6616 TAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACTCCCATCTTCCA 6557 Query 139617 GCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGA 139676 |||||| |||||| | ||||| | ||||||||| ||||| || ||||| || || || Sbjct 6556 ACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 6497 Query 139677 TTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGC 139736 |||| ||||| | | | || || | | || ||||| | || || ||||| | Sbjct 6496 TTTTGGCTTTTACATTTGATATCGTATCTGACAGTTCAACCTCGAGAGTGACGGTCTTCC 6437 Query 139737 CGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||||||||||| || ||||| Sbjct 6436 CTGTGAGGGTTTTTACGAAAATCTGCAT 6409 >seq658004 Length=3462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| | | ||||| ||||| ||||| || || | || | | | |||||| | ||| Sbjct 1418 GTGAAGC-TGGACTCCTTTTGGATGTTGTAGTCACACAAAGCACACCCGTCTTCCAACTG 1476 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | | ||| | |||||||| ||||| || ||||| || | |||||| Sbjct 1477 CTTGCCAGCAAAAACCAGTC--TGCTGATCAGGAGGAATTCCTTCCTTACCCTGGATTTT 1534 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||||| | ||| ||||| || | || || ||||| | ||| | ||||| || || Sbjct 1535 GGCTTTTACATTTTCTACTGTATCCGATGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 1594 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 1595 GAGGGTTTTTACGAAAATCTGCAT 1618 >seq629906 Length=10887 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| |||| || || | | || || | ||||| | ||| Sbjct 9729 TGAAGCGTGGACTCCTTTTGGATGTCGTAGTCAG--AGTATG-TCCA-TCTTCCAACTGC 9674 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| ||||| || ||||| || || |||||| Sbjct 9673 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 9614 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | | ||| || || Sbjct 9613 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGCCTTCCCTGTG 9554 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 9553 AGGGTTTTTACGAAAATCTGCAT 9531 >seq839444 Length=5194 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| | | || || ||||| ||||| || || || | | | ||||| | |||| Sbjct 3129 TGAAGCATGGATTCCTTTTGGATGTTGTAGTCAGACAAAGAACGCCCATCTTCCAACTGT 3070 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | | || |||| ||||| || ||||| || || |||||| Sbjct 3069 TTGCCAGCAAAAATCAGTCTTCGCCGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 3010 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | ||| || | || || ||||| | ||| | ||||| || || Sbjct 3009 GCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 2950 Query 139742 AACGTTTTTACGAATATTTGCA 139763 | ||||||||||| ||||||| Sbjct 2949 AGGGTTTTTACGAAAATTTGCA 2928 >seq742764 Length=2195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||| ||||| || || || || | ||||| | |||| Sbjct 1600 TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCTTCCAACTGT 1541 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||||||||| || ||||| || | |||||| Sbjct 1540 TTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCCTGGATTTTG 1481 Query 139682 TGTTTTAGCTGTTCCACTGTGT-CGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||||| | ||| | ||| | | ||| || ||||| | ||| | ||||| || || Sbjct 1480 GCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGAGGGTCTTCCCTGT 1421 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | |||||||| || || ||||| Sbjct 1420 AAGGGTTTTTACAAAAATCTGCAT 1397 >seq390795 Length=1973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| ||||| || || | || | | |||||| | |||| Sbjct 1735 TGAAGCGTGGACTCCTTTTGGATGTTGTAGTC----AAAGTACGCCTGTCTTCCAACTGT 1790 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | | || | ||||||||||||||| || ||||| || | || ||| Sbjct 1791 TTGCCAGCAAAAAA-AGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCCTGGACTTTG 1849 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| ||| || | || || ||||| | ||| | ||||| || || Sbjct 1850 GCTTTTACATTTTCTGTTGTATCCGATGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTG 1909 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 1910 AGGGTTTTTACGAAAATCTGCAT 1932 >seq309453 Length=3047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| | | || || || || | | |||||| | || Sbjct 1503 TGAAGCGTGGACTCCTTTTGGGTATCGTAGTCAGACAAAGTACGCCCGTCTTCCAAAGGT 1562 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | ||||| | ||||||||| |||| || ||||| || || |||||| Sbjct 1563 TTGCCAGCAAAAATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATTTTG 1622 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| || ||| ||| || || || ||||||| ||| | ||||| || || Sbjct 1623 GCTTTTACCTTTTCTGTTGTATCCAACGGTTCAACCTCAAGGGTGATGGTCTTCCCTGTG 1682 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| || ||||| Sbjct 1683 AGGGTTTTTACGAAAATCTGCAT 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490849089995200