Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq382080 268 9e-67 seq419922 113 4e-20 seq101110 96.9 3e-15 seq749787 86.0 6e-12 seq436660 82.4 7e-11 seq59382 82.4 7e-11 >seq382080 Length=1803 Score = 268 bits (296), Expect = 9e-67 Identities = 535/784 (68%), Gaps = 13/784 (2%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 580 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 639 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 640 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 699 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 |||| |||||||||||| | | || || | | | || ||||| | | | || Sbjct 700 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 759 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||| || | ||||||||| || || ||| || | || ||||| | || || || | Sbjct 760 TATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 818 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCTTTTATAATAATT 13823 |||| | | || | || || | ||| | | ||||| | | ||||| ||| Sbjct 819 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCAT---TGATAATGATT 875 Query 13824 GTAATAA-TCTCAT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAA 13878 | | |||| | || | |||| | ||| ||||| || || | | |||| Sbjct 876 TCTTTCACTCTCTGCTCTAACG--GATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAA 933 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || |||| Sbjct 934 CATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCA 993 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 ||| || ||||| || | ||| ||||| ||||| || || | |||||| ||||| | Sbjct 994 TCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTT 1053 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGATATCCAT 14057 | ||||| ||||| |||| | ||||||||| | | || | ||||| | ||||| Sbjct 1054 CTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAA 1113 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||| || | || || || | | || ||| |||||||| ||| | || ||| Sbjct 1114 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAA 1173 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 ||||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 1174 AATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAA 1233 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 ||||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 1234 GGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACT 1293 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || | ||||| || ||| |||||||| || || ||||||| ||| |||| || Sbjct 1294 TCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAA 1353 Query 14298 GCCA 14301 |||| Sbjct 1354 GCCA 1357 >seq419922 Length=2112 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 1825 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 1884 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 |||| |||| ||||| || |||||||||||||| || ||||||||| | ||||| |||| Sbjct 1885 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 1944 Query 13645 TAAAATCAAATGGATTT 13661 |||| |||||||||||| Sbjct 1945 TAAAGTCAAATGGATTT 1961 >seq101110 Length=3331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 1597 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 1538 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 1537 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1502 >seq749787 Length=1786 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAG 11367 |||| |||| || |||||||| |||| ||| || | | |||| |||| | || | Sbjct 1400 CATCCAAACCTTGAACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTG 1459 Query 11368 CCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11427 | | || || ||| |||||| | ||| | | ||| ||| ||||| | || ||| | Sbjct 1460 CAATTCGGTCACCTTTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACAC 1519 Query 11428 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATA 11487 ||| || || ||||||||||||||||| || || |||||| ||||| | | | | Sbjct 1520 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTG 1579 Query 11488 ACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACA 11524 | | ||||| | ||| |||| || ||||||||| Sbjct 1580 CAGCCAAGCCAGAACATGGAGCTACTCTTCCATAACA 1616 >seq436660 Length=1326 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 14114 TAAATA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 |||||| || | | ||||| | | | |||||| || |||||||| | |||||||||| Sbjct 86 TAAATACTTACCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTT 145 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||| |||||||||||||| || || || || ||||| || || | ||||| Sbjct 146 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTC 197 >seq59382 Length=1206 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||||| |||| || | ||| |||||||| || || | | ||||| | | Sbjct 707 TAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCT-GCCATAACTGCAAAACG 765 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || ||||| ||| |||||||| || ||||| ||||| | ||| || ||||| Sbjct 766 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 825 Query 13643 CATAAAATCAAATGGATTT 13661 |||||||||||| |||||| Sbjct 826 CATAAAATCAAAGGGATTT 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474684823420400