Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq382080 241 1e-58 seq749787 93.3 4e-14 seq101110 87.8 2e-12 seq436660 84.2 2e-11 >seq382080 Length=1803 Score = 241 bits (266), Expect = 1e-58 Identities = 529/783 (68%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 13313 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| ||| ||||||| | |||| ||| ||| | | || ||||| ||||| | | Sbjct 580 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 639 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 |||| |||| ||||| || ||||| |||||||| || ||||||||| | ||||| |||| Sbjct 640 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 699 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 |||| || ||||||||| | | || || | | | || ||||| | | | || Sbjct 700 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTCCAGCATAAGTC 759 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 ||| || | ||||||||| || || ||| || | || ||||| | || || || | Sbjct 760 TATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAGTTCATCTCAATGAGCTTCA 818 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTA-TAGACACAGCCTCGTTTATAATAATC 13611 |||| | | || | || || | ||| | | ||||| | | | || || || Sbjct 819 CAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAATGATT-TC 877 Query 13612 TTAATAATGTCAT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAA 13667 || | | || | || | |||| | ||| ||||| || || | | |||| Sbjct 878 TTTC-ACTCTCTGCTCTAACG--GATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAAC 934 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 || ||| || | | ||||||||| ||||| ||||| || |||||||| | || ||||| Sbjct 935 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 994 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||| || | ||| ||||| || || || || | |||||| ||||| || Sbjct 995 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 1054 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATT 13846 ||||| ||||| |||| ||||||||| | | || | ||||| ||||| Sbjct 1055 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 1114 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | || || || | | || ||| ||||| || ||| |||| ||| Sbjct 1115 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAAA 1174 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 |||| | ||||| | | | |||||| || |||||||| || |||||||||||||| Sbjct 1175 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 1234 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 |||||||||| || || || || || ||||| ||||| | ||||||| || || | Sbjct 1235 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACTT 1294 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | | ||||| || ||| ||||||||| || || ||||||| ||| |||| || | Sbjct 1295 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 1354 Query 14087 CCA 14089 ||| Sbjct 1355 CCA 1357 >seq749787 Length=1786 Score = 93.3 bits (102), Expect = 4e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 11085 CCACTTGAACCAAATCCATTATTATCTCTATTT-GTACCATCTAAACATTTAACTTCTTT 11143 ||| | |||||||| || || | | | || || || |||| |||| || |||||||| Sbjct 1363 CCAGTAGAACCAAAACC-TTCTGAACCCTGTTCAGTGTCATCCAAACCTTGAACTTCTTC 1421 Query 11144 AATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTTAAT 11203 |||| ||| || | | |||| |||| | ||||| | ||| || ||| |||||| Sbjct 1422 TATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTGCAATTCGGTCACCTTTTTTAAC 1481 Query 11204 ATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATGTTACCCCTATAATCTTC 11263 | ||| | | ||| | | ||||| | || ||| |||| || || ||||||||||| Sbjct 1482 TTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTCTATAATCTTC 1541 Query 11264 ATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGC 11323 |||||| || || |||||| ||||| | | | | | | ||||| | ||| || Sbjct 1542 ATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTGCAGCCAAGCCAGAACATGGAGC 1601 Query 11324 TATTCGTCCATAACA 11338 || || ||||||||| Sbjct 1602 TACTCTTCCATAACA 1616 >seq101110 Length=3331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 1597 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 1538 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 1537 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 1502 >seq436660 Length=1326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 114 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 173 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 174 GAAGCCATAGAAACAGCGGGCTTCTG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473557599345840