Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq742764 89.7 4e-13 >seq742764 Length=2195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||| | ||||||||||| | ||| | ||| ||||||||| | ||||| || ||| Sbjct 1624 CCACCATGAAGTCTTAACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1565 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||| | | || ||||| |||||||| |||||||||| || || ||||||| || Sbjct 1564 AAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGA 1505 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCA-GCCTCGAC 43061 | ||||| || | ||| |||| || | | | ||| || | | || || Sbjct 1504 ATTCCTTCCTTACCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAAC 1445 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || | || || || || || ||||| |||||||| ||||| || Sbjct 1444 CTCTAGGGTGAGGGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATCTT 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377460652890348