Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq808566 98.7 1e-15 seq449207 98.7 1e-15 seq270171 96.9 3e-15 seq350439 93.3 4e-14 seq839444 86.0 6e-12 seq667311 86.0 6e-12 seq742764 84.2 2e-11 seq611773 82.4 8e-11 >seq808566 Length=7867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 1317 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 1258 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 1257 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTT 1198 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||||| | ||| | || |||| ||||| || || | || | ||||| || || Sbjct 1197 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 1138 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| || ||||| Sbjct 1137 GAGGGTTTTTACGAAAATCTGCAT 1114 >seq449207 Length=1366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 332 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 273 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 272 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTT 213 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||||| | ||| | || |||| ||||| || || | || | ||||| || || Sbjct 212 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 153 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| || ||||| Sbjct 152 GAGGGTTTTTACGAAAATCTGCAT 129 >seq270171 Length=3188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| |||||||| || || || | | || Sbjct 2531 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2472 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 2471 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2412 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 2411 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2352 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||||||| || ||||| Sbjct 2351 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2319 >seq350439 Length=8302 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || || || ||||| |||||||| || || || ||| ||||| | || Sbjct 6612 ATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACTCCCATCTTCCAACTG 6553 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | ||||| | ||||||||| ||||| || ||||| || || ||||| Sbjct 6552 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 6493 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||||| | | | ||| || | |||| || || | ||| || ||||| || || Sbjct 6492 GGCTTTTACATTTGATATCGTATCTGACAGTTCAACCTCGAGAGTGACGGTCTTCCCTGT 6433 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| || ||||| Sbjct 6432 GAGGGTTTTTACGAAAATCTGCAT 6409 >seq839444 Length=5194 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| | ||||| ||||| |||||||| || || | | | || Sbjct 3139 CAACACAAGATGAAGCATGGATTCCTTTTGGATGTTGTAGTCAGACAAAGAACGCCCATC 3080 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | | || |||| ||||| || ||||| || || Sbjct 3079 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTCGCCGATCAGGAGGAATTCCTTCCTTATC 3020 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 3019 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2960 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCA 143183 ||| || || | ||||||||||| ||||||| Sbjct 2959 CTTCCCTGTGAGGGTTTTTACGAAAATTTGCA 2928 >seq667311 Length=5630 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| |||||||| || || || | | || Sbjct 4161 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 4220 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | ||||||||| | ||| || |||| || || Sbjct 4221 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGAAGGAATTTCTTCCTTATC 4280 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || |||| ||||| || || | || | || Sbjct 4281 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 4340 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCA 143183 ||| || || | ||||||||||| || |||| Sbjct 4341 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCA 4372 >seq742764 Length=2195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || | ||||| ||| || || ||||| |||||||| || || || | ||| Sbjct 1609 AACACAAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGCCCATCT 1550 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||||| |||||| | ||||| | ||||||||||||||| || ||||| || | Sbjct 1549 TCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCGGGAGGAATTCCTTCCTTACCC 1490 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCC-GTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || ||| |||||| || || | || | || Sbjct 1489 TGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGGTTCAACCTCTAGGGTGAGGGT 1430 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | |||||||| || || ||||| Sbjct 1429 CTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 1397 >seq611773 Length=2016 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || ||||| ||||||||||| || || | | || Sbjct 1475 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1534 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || || ||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 1535 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1594 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 | ||||| ||||| | ||| | || | ||||| || |||| || | || Sbjct 1595 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1654 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||| ||| || ||||| Sbjct 1655 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501684373093920