Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq382080 255 5e-63 seq517911 98.7 8e-16 seq373797 87.8 2e-12 seq59382 86.0 5e-12 seq436660 84.2 2e-11 >seq382080 Length=1803 Score = 255 bits (282), Expect = 5e-63 Identities = 507/744 (68%), Gaps = 9/744 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 |||||||||| ||| | ||||| || | ||||| || ||||| ||||| || |||| Sbjct 619 TTGACATAACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 678 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT--T 12960 |||| | ||||||| |||||||| || || |||||| | || | | | | Sbjct 679 CTTCCAGTAAAATATTCTCCATAAAGTCAAATGGATTT--CCTACTCTGAAAACCTCGCT 736 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | ||| || | | ||| | || |||||||| |||||||| ||||| || | Sbjct 737 AAATCCCAGTTCCAGCATAAGTCTATTGGCCACAAACTCAATGTACTGCTTCATCAAG-C 795 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA-TAT 13079 |||||||| | || | || ||||||| ||| ||||| | || | | ||| | | | Sbjct 796 GCAGTTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCT 855 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCT 13139 || || | ||||| || ||| | | | | |||||| ||| | | || || | Sbjct 856 TGACAGCATTGATAATGATTTCTTTCACTCTCTGCTCTAACGGATAGTGTAGCAGGTGTT 915 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 | ||||||| | |||| || |||||| || | |||||||| || || || || || | Sbjct 916 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 975 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 ||||||| ||||| ||||| || | ||||| || | ||| ||||| |||||||| | Sbjct 976 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGC 1035 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CT 13317 | | ||| || |||||||| ||||||||||| |||| | | ||| ||||| ||| || Sbjct 1036 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 1095 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 ||| | | | ||||| |||||| | ||| || | || || || ||| | Sbjct 1096 CCTTTGTC-CCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGT 1154 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || | || ||| | | |||| || ||| ||| ||||| || || | Sbjct 1155 TTCAATGGCACTGAAGAAAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAG 1214 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || ||||||||||| ||| | || |||||||| || |||||||| ||||| ||||| | Sbjct 1215 GAAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCG 1274 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | |||||||| | ||||| || | | |||||| || || || || Sbjct 1275 GGCTTCTGTAATGTGAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCC 1334 Query 13558 GTCACTAGCAGCaaaaaaaGCAAG 13581 |||| || |||| ||||| || Sbjct 1335 ATCACATGCTACAAAGAAAGCCAG 1358 >seq517911 Length=2699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 13168 CAATCCTT----CATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 |||||||| ||||||| || || || || || ||||| || || || |||||||| | Sbjct 1239 CAATCCTTACCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGAC 1298 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283 ||| || || | ||| |||||||||||||| || || || || || |||||||| || | Sbjct 1299 CTCTCTTCTTCAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAG 1358 Query 13284 CTGCAAACGCTATCAAC-CTTTCACC 13308 | ||||| || | |||| ||||| || Sbjct 1359 CAGCAAAGGCCA-CAACTCTTTCCCC 1383 >seq373797 Length=7172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || ||||| || |||||||||||||||||| |||| |||||||| || | Sbjct 6289 AATCTGTCTGCTACAAATTCAATGTACTGTTTCATTAAAACACAATTCATTCCAATGAGG 6348 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 6349 CCAACAGGCAAGGCTTCTGTTAAAAA 6374 >seq59382 Length=1206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATTT 12860 ||||||||| ||| | | ||| |||| ||| || || | || |||||| | | Sbjct 706 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTT-TCTGCCATAACTGCAAAAC 764 Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||| Sbjct 765 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTT 824 Query 12921 CCATAAAATCGAAAGGATTTT 12941 |||||||||| || ||||||| Sbjct 825 CCATAAAATCAAAGGGATTTT 845 >seq436660 Length=1326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 114 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 173 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || ||||||||| Sbjct 174 GAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426564933566412