Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq449898 93.3 4e-14 seq270171 84.2 2e-11 >seq449898 Length=3288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| |||||||||||||||||| |||| ||| ||| | Sbjct 1246 CTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCA 1305 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||| ||| || || |||| | | |||||||| || | |||||||| Sbjct 1306 TCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTA 1365 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| ||||| || | | |||| ||||| | | || ||||| || ||| Sbjct 1366 TCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCGAGGGTGATG 1425 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || ||||| ||||| ||||||||||||||| || Sbjct 1426 GTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTTG 1464 >seq270171 Length=3188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| ||||||||| |||||||| |||| ||| ||| | Sbjct 2533 CTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCA 2474 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||| ||| || || | |||| | | |||||||| || | | |||||| Sbjct 2473 TCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 2414 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| ||||| || | | |||| ||||| | | || ||||| || ||| Sbjct 2413 TCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATG 2354 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || ||||| ||||| || |||||||||||| || Sbjct 2353 GTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCATCTTG 2315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416933476037006