Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq712728 86.0 3e-12 seq311182 84.2 1e-11 seq798848 82.4 4e-11 seq473143 82.4 4e-11 >seq712728 Length=7864 Score = 86.0 bits (94), Expect = 3e-12 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11424 CAGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 || ||||| | | || ||| |||| || |||||| | |||||||||| |||| Sbjct 1134 CAAGGAAAAAAAAAAGTAAGTAAAAGGACAAGTGGCCCGTACGGGGATCGAACCCGCGAC 1193 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 1194 CTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1239 >seq311182 Length=4177 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11443 TAAAAAA--TCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| |||| | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 3331 TAAAAAAGGTCAACAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 3272 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||| |||| Sbjct 3271 ACCACGCTCTAACCAACTGAGCTAACCGGCC 3241 >seq798848 Length=11679 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 486 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 427 Query 11528 CC 11529 || Sbjct 426 CC 425 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11475 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11416 Query 11528 CC 11529 || Sbjct 11415 CC 11414 >seq473143 Length=825 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 234 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 293 Query 11528 CC 11529 || Sbjct 294 CC 295 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258810977794456