Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq727490 141 1e-28 seq537806 91.5 2e-13 >seq727490 Length=5811 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || ||||| | |||| |||||||| || | || | |||| ||| Sbjct 2759 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATT 2818 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || || ||||| |||||||||||||| |||||||| | || || ||||| Sbjct 2819 TTAAAACCTACTTCTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGAGAACAGATAGGA 2878 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| ||||||| ||| Sbjct 2879 TTACCCATCAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCACCAAAG 2938 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||||| || || ||||||||||||| | | | |||| ||||| || || ||| Sbjct 2939 ATGGCGTCTGGGCGTGGCTTTTCCACCAGCAGGGCTGGATACAGCTCCATGGCATCAATG 2998 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || || | || | || |||||||| ||||||| Sbjct 2999 TCACCATACAGTGCTTCCAACTCCGTGGCCATTTCCTTCTCTCCTG 3044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 || |||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 5608 CTCACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCCGTCTTGAAA 5667 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || ||||| || || |||| || | |||||| | || ||||| || ||||| Sbjct 5668 AACTGATGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCTTGAGGATCA 5727 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | || || ||||||||||| Sbjct 5728 GGGATGAACTTTCTTCTCAGCAGGAATTTTTCCACAA 5764 >seq537806 Length=10837 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || || ||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 1027 CTCACGCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 1084 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||| | Sbjct 1085 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGGGGT 1144 Query 10147 CGGGAGTGAAGGTCCTCC 10164 |||| |||| |||||| Sbjct 1145 CGGGTATGAACTTCCTCC 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701076379900640