Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq275171 123 4e-24 seq275154 123 4e-24 seq602604 122 1e-23 seq275115 114 2e-21 seq458582 109 9e-20 seq275122 98.7 2e-16 >seq275171 Length=8003 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 480 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 421 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 420 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 361 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 360 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 301 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 300 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 241 Query 16672 CCG 16674 ||| Sbjct 240 CCG 238 >seq275154 Length=5022 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 3918 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 3977 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3978 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 4037 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 4038 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 4097 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 4098 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 4157 Query 16672 CCG 16674 ||| Sbjct 4158 CCG 4160 >seq602604 Length=3153 Score = 122 bits (134), Expect = 1e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || |||| |||||||| || ||||||||||| || | Sbjct 311 CGCCAAGCGCCACCGGAAGGTC-CTGAGAGACAACATCCAGGGCATCACCAAGCCCGCCA 369 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || || |||||||| |||| || | |||| || |||| Sbjct 370 TCCGGCGGCTTGCTCGGCGCGGAGGGGTCAAGCGGATCTCCGGCCTCATCTACGAGGAGA 429 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 430 CCCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACGG 489 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || || ||||| |||||| | ||||| Sbjct 490 AGCACGCCAAGCGCAAGACCGTCACCGCGATGGA 523 >seq275115 Length=16323 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 3168 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 3109 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| | || || | |||| || |||| Sbjct 3108 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATTTCCGGCCTCATCTACGAGGAGAC 3049 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 3048 CCGCGGGGTGCTCAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 2989 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 2988 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 2929 Query 16672 CCG 16674 ||| Sbjct 2928 CCG 2926 >seq458582 Length=3332 Score = 109 bits (120), Expect = 9e-20 Identities = 173/244 (71%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 537 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 596 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || | || |||||||| |||| || | |||| || |||| Sbjct 597 CCGCCGCCTGGCCCGGCG-CGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 655 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 656 CCGCG-GGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 714 Query 16612 GCACGCTAAA-CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||| ||| || ||||| ||||| ||||||| | || || || | || || || | Sbjct 715 GCACGCCAAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 774 Query 16671 GCCG 16674 |||| Sbjct 775 GCCG 778 >seq275122 Length=731 Score = 98.7 bits (108), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 464 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 523 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 524 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 583 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | | | || | ||| | ||| ||| |||| || || ||| ||| ||||| Sbjct 584 CCGCG--GGTGCTCAGGTGTTCTTGGAGAACGTGATCCGGGACGCCGTCC-CTACACCGA 640 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||| | ||||||| Sbjct 641 GCACGCCAAGCGCAAGACAGTCTCGGCCATGGA 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78306262327158