Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq382080 170 2e-37 seq59382 96.9 4e-15 seq419922 95.1 1e-14 seq101110 86.0 7e-12 seq337753 82.4 8e-11 >seq382080 Length=1803 Score = 170 bits (188), Expect = 2e-37 Identities = 510/783 (65%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| ||||||||||| | ||| ||| || | ||||||||| |||||| | | Sbjct 580 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 639 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 |||| |||| ||||| || || || || || ||||||||||||| | | ||| |||| Sbjct 640 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 699 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-T 21307 |||| |||||||||||| | | | || | | || | |||||||| | |||| | Sbjct 700 TAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATCCCAGTTC-CAGCATAAGT 758 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 |||| || ||||| || || || || ||| || | || ||||| | || | || Sbjct 759 CTATTGGCCACAAACTCAATGTACTGCTTCATCAA-GCGCAGTTCATCTCAATGAGCTTC 817 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTA-TAGAGACGGCTTCAACAATTATATT 21426 ||||| | ||| | ||| | || | ||| | | ||| || | | ||| ||| Sbjct 818 ACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACAGCATTGATAAT--GATT 875 Query 21427 TATTATCCTAGATGTACTAGGGGGATA---CAATAATTGTTTAAACATCAAACATGCAAA 21483 | || || || ||| ||||| | | ||||| ||||||| | |||| Sbjct 876 TCTTTCACTCTCTGCTCTA-ACGGATAGTGTAGCAGGTGTTTGAACATCAGGTAGGCAAC 934 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 || ||| || |||| ||||| || || || | |||||| |||||||| | ||| ||||| Sbjct 935 ATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCAT 994 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || || | || | ||| ||||| | ||||| | || | |||||| || || || Sbjct 995 CAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTC 1054 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATT 21662 || || ||||| || || | ||||| || || |||| | |||| ||| ||||| Sbjct 1055 TACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAAC 1114 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | |||||| | || | |||| || || ||||| || | || | | Sbjct 1115 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAAA 1174 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| | ||| | ||| |||||||||||||||| Sbjct 1175 ATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAG 1234 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 |||| ||||| || || || || || || || ||||| | || |||| | ||||| | Sbjct 1235 GTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACTT 1294 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | |||||| | ||| |||||||||||| || ||||||| || |||| || | Sbjct 1295 CTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAG 1354 Query 21903 CCA 21905 ||| Sbjct 1355 CCA 1357 >seq59382 Length=1206 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| || | || ||||||||| ||| || ||||| | | | Sbjct 706 TTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAACG 765 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || ||||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 766 CTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTC 825 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||||||||| |||||||| | | |||||| Sbjct 826 CATAAAATCAAAGGGATTTTCTGCATGAAATAT 858 >seq419922 Length=2112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| ||||||||||| | ||| ||| || | ||||||||| |||||| | | Sbjct 1825 AAAAGTCAGCATCTAAGGTAAAAGAATTCTCGGTTGGACTTGACATAACTCCCATCCTCT 1884 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 |||| |||| ||||| || || || || || ||||||||||||| | | ||| |||| Sbjct 1885 GATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTAAAATATTCTCCA 1944 Query 21249 TAAAATCAAATGGATTT 21265 |||| |||||||||||| Sbjct 1945 TAAAGTCAAATGGATTT 1961 >seq101110 Length=3331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||||| Sbjct 1599 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 1540 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||||| ||| ||| |||||||| |||||||||||||| Sbjct 1539 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTC 1500 >seq337753 Length=8369 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514 || || |||| ||||| ||| |||| || |||| || || ||||| || ||||| || Sbjct 6217 GAGTACAAAAAGGACCCCCAAA-GATGTCAAGATGGCACTATTGAATTCACAAGCATTGA 6275 Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574 | ||||| ||| | ||| || || || || ||||| ||||| | ||||||| || Sbjct 6276 TGTGCATAATGGTGTGGCCCCATCAAGACGTGGTGATTTGAAAATACTTTGTTATTGCAT 6335 Query 145575 GATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATGT 145634 | || || | |||| | | || |||||||||||||| ||| || ||| ||||| Sbjct 6336 GCTTCAGTGCCTCAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCTTAACTATGT 6395 Query 145635 AA-TGAATTCAAAAGTAGA 145652 || || | ||||| |||| Sbjct 6396 AAGAGATTCCAAAATTAGA 6414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526309152947440