Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq631619 208 2e-48 seq629557 91.5 4e-13 >seq631619 Length=7703 Score = 208 bits (230), Expect = 2e-48 Identities = 1057/1656 (64%), Gaps = 38/1656 (2%) Strand=Plus/Minus Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACG 363561 ||||||| || ||||||||| |||| ||||| || ||| ||||| || ||| | Sbjct 3238 TTGATGCTGCAATTGAAACAGATAACCTTCTTTCTGAGAAGTGG-TTCACTCATGCCTCT 3180 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATC-CACAGA--TGTCTTCTTGCTTTCTTCTA 363618 || || | | ||||||||| || |||| | |||| | ||| | | || ||||| Sbjct 3179 CCCACTCTCTTCAATGCTGGCACC---AATCGCCCAGAACTTTCTACCTATTTCCTTCTG 3123 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 | ||||| || || ||| || || || | ||| || || ||| | |||||| | ||| Sbjct 3122 AGCATGAAAGATGACAGCATTGAAGGGATTTATGATACTCTAAAGCAATGTGCTTTGATT 3063 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 || ||| ||| || ||||||||||| | | | |||| || || | ||| || Sbjct 3062 TCTAAGTCTGCTGGAGGAATTGGTGTTGCTGTGAGTTGTATTCGGGCTACTGG-CAGCTA 3004 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 |||| || || || | || ||||| || || || ||||| | || | || Sbjct 3003 CATTGCTGGGACTAATGGCAATTCCAATGGCCTTGTACCAATGCTGAGAGTATACAGTAA 2944 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || | ||||| || || |||||| |||| ||||| |||||||| || || Sbjct 2943 TACAGCTCGATACGTAGATCAAGGTGGAAACAAGCTTCTTGGGGCATTTGCTATTTACCT 2884 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 | ||| | ||| || || ||||||||||| || | ||| ||||| ||||| || Sbjct 2883 GAAACCTTAGCATTTAGACATCTTTGAGTTTCTCGATTTAAAGAAGAACACAGGAAAGGA 2824 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||| | ||| | ||||| |||| ||| |||||| |||| || | || ||||| | Sbjct 2823 AGAACAGTATGCGAGGGATCTTTTCTTTGCCCTTTGGATTTCAGATCTCTTCATGAAATG 2764 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 ||||| | | || | ||||| | | || ||| | || ||||| || || || Sbjct 2763 GGTGGAAACTAATCAGGACTGGTCTTTGATGTGTCCAAATGAGTGTCCTGGCCTGGATGA 2704 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 || ||||| || || | || ||||| ||||||||||| | |||| | ||| Sbjct 2703 AGTTTGGGGAGAAGAATTTGAGAAGCTATATGAAAAGTATGAGAAGCAGGGTCACATTCG 2644 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || | || ||| |||| |||| ||| || || || || |||| ||||| | Sbjct 2643 CAAAGTTGTGAAAGCTCAGCAGCTTTGGTATGCTATTATTGAGTCTCAGACAGAGACTGA 2584 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || ||||| ||| | |||||| |||| || || | ||| |||||||||| |||| || Sbjct 2583 CAC-CCCTACATGCTCTACAAAAATTCCTGTAATCATAAGAGCAACCAGCAGAACCTGGG 2525 Query 364218 TACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGAC 364277 |||| | |||||||| || || || || | || || ||| || ||| Sbjct 2524 AGCAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGTATACCAGCAAAGAGGAGGT 2465 Query 364278 TGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAAGATGGTACTTT 364334 ||| || |||||| | || || | || || || ||| | ||| || | Sbjct 2464 TGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAATATGTATGTCACATCAGAACACACGTA 2405 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTT 364392 ||| || | || ||| || || | |||| | | | || | | || || Sbjct 2404 CGACTTTAAGAAGCTGGCTGAAGTCACTGAAGTCAT--TGTTCGAAACTTGAATAAAATT 2347 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT-TCTAATATGCGTCATCGCCC 364451 || | | || || || || ||||| || || | ||| || |||| || |||| ||| Sbjct 2346 ATTAATAGAAACTACTACCCTATTCCAGAGGCATA-CGTATCAAATAAACGCCATCACCC 2288 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT-GGCATTTG 364510 ||||| |||| || || | || |||| | |||||| || | |||| |||||| Sbjct 2287 CATTGGAATTGGGGTTCAAGTTCTGGCTGTTGCTTTTATCTTGAT-GAGATATCCATTTG 2229 Query 364511 ATTCGCCTGACGCTCGTGTT-CTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 | || || | || ||| || |||||| | |||||| |||| || |||| || || Sbjct 2228 AAAGTCCAGA-GGTCCAGTTACTGAATAAGCAAATCTTTCAAACTATTTATTATGGAGCC 2170 Query 364570 ATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCC 364629 || || ||||| |||| ||| | || || || |||||||| || Sbjct 2169 TTGGAAGCCAGCTGTGACCTGGCCAAAGAGTATGGTCCATAGGAAACCTATGAGGGCTCT 2110 Query 364630 CCTCTTTCGCAGGGAAAAT-TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 || | ||| |||| | | |||| ||| | |||||||| || || | | || || Sbjct 2109 CC-AGTAAGCAAAGAAATTCTTCAGTATGACGTGTGGAATGTTACTCCCACAGACCTGTG 2051 Query 364689 GAACTGGGA--TACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTT 364746 | ||||| | | | | | | ||| || ||| ||||| | ||| | || Sbjct 2050 GGACTGGAAACTTCTCAAGG--ACAAGATTGCAAAGTATGGTGTAAGAAACAGTTTACTT 1993 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 | || || ||| | || ||| | ||||| |||||| | || || || |||| | | ||| Sbjct 1992 ATTGCCCCAATGACTACTGCTGCAACTGCTCAGATCTTGGGGAATAATGAGTCCATTGAA 1933 Query 364807 CCGTTTACAAGCA--ATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 || | ||| |||| |||| ||| ||| | || | || |||||||||| | | || | Sbjct 1932 CCTTATACCAGCAACATCTACATT--CGCAGAGTCTTGTCAGGAGAATTTCAGATTGTAA 1875 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 || || || | || |||||| | || | || ||||| ||| ||||| || Sbjct 1874 ATCCTCACTTACTGAAAGATCTTACTGAGTGGGGCTTGTGGAATGAAGAGATGAAAAATC 1815 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 | || || || ||||| ||| | |||| ||| |||| | || | || || |||||| Sbjct 1814 AGATTATTGCATGCAATGGCTCTATCCAGAGCATACCAGAAATTACTGATGACCTGAAGG 1755 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 |||| || || | |||||||| ||| | |||| | | | |||| ||||| Sbjct 1754 AACTTTATAAGACTATGTGGGAAATCTCCCAGAAAACTGTTCTCAAGATGGTAGCCGAGA 1695 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC--ATGACTCAGCCAACCTC 365102 | | | |||| || ||| || ||||| || || ||| | || || | || | || Sbjct 1694 GAGATACTTTCATTGATCAAAGTCAGTCTTTGAA--TATCCATATTGCTGAACCTAACTA 1637 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | ||| || || ||||| ||||| || ||||| Sbjct 1636 TGGCAAACTCACCAGTATGCACTTCTATGGCTGGAA 1601 >seq629557 Length=4010 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||| || || || || |||| ||||| || || ||||| ||| Sbjct 1244 GCTCAGCAGCTTTGGTATGCTATTATTGAGTCTCAGACAGAGACTGGTACCCCCTACATG 1303 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 1304 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 1363 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 1364 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289309457466692