Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq449898 104 2e-17 seq377023 104 2e-17 seq651517 102 7e-17 seq270171 102 7e-17 seq667311 96.9 3e-15 seq713515 93.3 4e-14 seq350439 91.5 1e-13 seq269331 91.5 1e-13 seq158964 91.5 1e-13 seq506967 86.0 5e-12 seq325611 84.2 2e-11 seq742764 82.4 6e-11 seq629906 82.4 6e-11 >seq449898 Length=3288 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| ||||| || || ||||| ||| |||| || | Sbjct 1463 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 1404 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||| | | || |||| Sbjct 1403 CCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAAGAATTCCTCCTGAT 1344 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| | | |||||||| || ||||||| || || | || || Sbjct 1343 CAGCAAAGACTGATTTTTTCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 1284 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGG 115509 ||||||||||| ||||| || | ||| | ||||||||| | || || Sbjct 1283 AACATTCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGG 1237 >seq377023 Length=3771 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| ||||| || || ||||| ||| ||| || | Sbjct 1890 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGGGGTTGAA-CT 1832 Query 115343 AGCG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || | || | | | | |||||| ||||| ||||| ||||| | | ||| Sbjct 1831 ATCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCTTCCTGA 1772 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| |||| ||| |||||||| || ||||||| | || || | || || Sbjct 1771 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATACTTTGTCTGACTA 1712 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| || | || | ||||||||||| || || || Sbjct 1711 CAACATCCAAAAGGAGTCCACGCTTCACCTTGTGTTGAGATTTCGTGGTGG 1661 >seq651517 Length=23778 Score = 102 bits (112), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | ||||| ||||| || || ||||||||| |||| || | Sbjct 17086 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 17027 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| |||||| ||| |||| Sbjct 17026 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCC----TGAT 16971 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| | | |||||||| || ||||||| || || | || || Sbjct 16970 CAGCAAAGACTGATTTTTTCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 16911 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGG 115509 ||||| ||||| ||||| || | ||| | ||||||||| | || || Sbjct 16910 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGG 16864 >seq270171 Length=3188 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || ||||| ||| |||| || | Sbjct 2316 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 2375 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 2376 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 2435 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 2436 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 2495 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||| ||||| ||||| || | ||| | ||||||||| Sbjct 2496 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 2534 >seq667311 Length=5630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 115287 TGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCG 115346 |||| ||||| || ||||| ||||| || || ||||| ||| |||| || | | Sbjct 4372 TGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCGTCGG 4313 Query 115347 ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGC 115406 | || | | | | |||||| ||||| ||||| |||| | || |||||||| Sbjct 4312 ATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGAAATTCCTTCTGATCAGC 4253 Query 115407 AAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACA 115466 ||||||| |||| ||| |||||||| || ||||||| || || | || || |||| Sbjct 4252 AAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTACAACA 4193 Query 115467 TTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 4192 TCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTTCGTGGTGG 4147 >seq713515 Length=817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || ||||| ||| |||| |||| |||| Sbjct 639 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 580 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || |||||||||||| |||| ||||||| Sbjct 579 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAG 520 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||| || | ||||||| | || | | || || ||| Sbjct 519 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 460 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| |||||||||||| | || |||| Sbjct 459 ATTCAGAAAGAGTCTACTCTGCACCTGGT 431 >seq350439 Length=8302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA---G 115339 || ||||| ||||| || ||||| ||||| || || ||| | || |||| || | Sbjct 6406 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCGTCACTCTCGAGGTTGAACTG 6465 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 || || || | | | |||||| ||||| ||||| ||||| | || | Sbjct 6466 TCA---GATACGATATCAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCT 6522 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||||| |||| ||| |||||||| || ||||||| | ||| || | || Sbjct 6523 GATCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGAGTACCTTGTCTGAC 6582 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 || ||||| ||||| ||||| || | ||| | |||||||| Sbjct 6583 TACAACATCCAAAAGGAGTCCACGCTTCATCTTATGTTGAGA 6624 >seq269331 Length=2190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| | |||||| || || ||||| || || ||||| ||| |||| || | Sbjct 697 AAGATGCAGACTTTTGTAAACACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 756 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || || | Sbjct 757 TTGGATACAATAGAAAATGTAAAAGGCAAAATCCAGGATAAGGAAGGAATTCCTCCTGTT 816 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| |||||||| || ||||||| || || | || || Sbjct 817 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGTGTACTTTGTCTGACTAC 876 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 877 ATCATCCAAAAGGAGTCCACACTTCATCTTGTGTTGAGACTTCGTGGTGG 926 >seq158964 Length=5733 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || ||||| ||| |||| || || Sbjct 4944 AAGATGCAGATTTTAGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAA-CC 4886 Query 115343 AGCG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || | || | | | | |||||| |||||| ||||| ||||| | || ||| Sbjct 4885 ATCGGATACAATAGAAAATGTAAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCTGA 4826 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| |||| ||| ||||| || || ||||||| | || | || || Sbjct 4825 TCAGCAAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGATGGACATAC----TCTGACTA 4770 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||| ||||| ||||| || | ||| | ||| ||||| Sbjct 4769 CGACATCCAAAAGGAGTCCACACTTCATCTTGTGCTGAGA 4730 >seq506967 Length=1334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | ||||| ||||| || || ||||| ||| | ||| || | Sbjct 887 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAACCG 828 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 827 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAAGATAAGGAAGGAATTCCTCCTGAT 768 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| ||| ||| ||||| || || ||||||| | || | || || Sbjct 767 CAGCAAAGACTGATTGTTGCTGGCAACCAGTTGGAAGATGGGCATAC----TCTGACTAC 712 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| || | ||| | ||||||||| | || || || Sbjct 711 AACATCCAAAAGGAGTCCACACTTCATCTTGTGTTGAGACTTCGTGGTGG 662 >seq325611 Length=6228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC- 115341 || ||||| ||||| || ||||| ||| | || || ||||| ||| | || || || | Sbjct 436 AAGATGCAGATTTTCGT-AAAACCCTCTCAGGGAAGACCATCACCCTAGAGACTGAACCG 494 Query 115342 -CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGA-TAAAGAAGGCGTCCCCGTT 115399 ||| ||| | | | | |||||| ||||| | || ||| ||||| | || | Sbjct 495 TCAGGTACAATA--GAAAATGTAAAAACCAAAATC-CAGAGTAAGGAAGGAATTCCTCCT 551 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 |||||||||||||| |||| ||| |||||||| || ||||||| | || | || Sbjct 552 GATCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTGCTTTGTCTGAC 611 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| ||||| ||||| || | ||| | || |||||| | || || || Sbjct 612 TACAACATCCAAAAGGAGTCCACGCTTCATCTTGTATTGAGACTTCGTGGTGG 664 >seq742764 Length=2195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| || || || || ||| | ||| | || || || Sbjct 1394 AAGATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACCCTCACCCTAGAGGTTGAACCC 1453 Query 115343 AGCG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || | | | | |||||| ||||| | ||| ||||| | || || Sbjct 1454 TTTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGGAAGGAATTCCTCCCGA 1513 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| |||| ||| |||||||| || ||||||| | || || | || || Sbjct 1514 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATACTTTGTCTGACTA 1573 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||| ||||| ||||| || | ||| | ||||| ||| Sbjct 1574 CAACATCCAAAAGGAGTCCACACTTCATCTTGTGTTAAGA 1613 >seq629906 Length=10887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/221 (68%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| ||||| || || |||| ||| |||| || | Sbjct 9528 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGGCCATCACCCTCGAGGTTGAACCG 9587 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | |||||| ||||| ||||| ||||| | || |||| Sbjct 9588 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 9647 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| |||| ||| ||||| || || ||||||| | || | || || Sbjct 9648 CAGCAAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGATGGACATAC----TCTGACTAC 9703 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATT 115503 |||| ||||| ||||| || | ||| | ||| ||||||| Sbjct 9704 GACATCCAAAAGGAGTCCACGCTTCATCTTGTGCTGAGATT 9744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420984325816720