Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq198121 123 2e-23 seq345138 120 3e-22 seq713515 107 2e-18 seq335148 96.9 3e-15 seq270171 82.4 7e-11 >seq198121 Length=2544 Score = 123 bits (136), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || |||||||||||| | Sbjct 240 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 181 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||| || || || |||| || | ||||||||| || ||| Sbjct 180 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 121 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||||| | ||| | || || ||| ||||| Sbjct 120 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 61 Query 131188 TCGACGGTAACGGT-TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || | | || || ||||| ||||| |||||||| Sbjct 60 TCGAGGGTGATGGTCTTCAACAGTCAGGGTTTTCACGAAGATCTGCAT 13 >seq345138 Length=2957 Score = 120 bits (132), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| ||||||||| | || | ||| ||||| || || |||||||| Sbjct 2309 ATGATGCCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAG 2368 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || ||||| ||||| | ||| ||||| || | || | |||||||||||| Sbjct 2369 TCAGACAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCA 2428 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| |||||| ||||| | ||| | || || ||| | Sbjct 2429 GGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 2488 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| | ||| || || | || || || ||||| |||||||| Sbjct 2489 TCGACCTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCAT 2541 >seq713515 Length=817 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | || ||||| || ||||||||||| || Sbjct 411 AGCCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAG 470 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | |||||| || |||| Sbjct 471 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAG 530 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 531 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 590 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 591 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 >seq335148 Length=7748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| || ||| |||| ||||||||| | ||| | ||| ||||| || || ||||| || Sbjct 7073 ATGATGCTACCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAG 7132 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| || || ||||| ||||| || | || | ||||||||||| Sbjct 7133 TCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTA 7192 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| |||||| ||||| | ||| | || || ||| | Sbjct 7193 GGTGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 7252 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || ||| | ||| || || || || || || ||||| |||||||| Sbjct 7253 CTGACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 7305 >seq270171 Length=3188 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || ||||||||||| |||||||| || || || ||| || Sbjct 2531 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2472 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || | ||| ||||| || | || | | ||||| || ||||| |||||||| || || Sbjct 2471 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2412 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| || | | || | ||||| | | || | |||| ||| | ||| Sbjct 2411 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2352 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || |||||||||||||||||||| Sbjct 2351 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467050730039040