Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq345138 104 2e-17 seq198121 93.3 3e-14 seq713515 87.8 1e-12 seq235349 84.2 2e-11 >seq345138 Length=2957 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || |||||||| || || ||||||||||| | | Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | |||||||| |||||||| ||| | || || ||||| ||||| || Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||| || | | | ||||| | |||||| Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || |||| || || || || |||||||| || Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTT 2544 >seq198121 Length=2544 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | || |||| ||||| |||||||| || || ||||||||||||| Sbjct 469 CCCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 410 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 409 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 354 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 353 GGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCT 294 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || || ||||| || || || || |||||||| Sbjct 293 CGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | || |||| ||||| |||||||| || || ||||||||||||| Sbjct 697 CCCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 638 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 637 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 582 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 581 GGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 522 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || || ||||| || || || || |||||||| Sbjct 521 CGACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 470 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 925 CCCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 866 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 865 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 810 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 809 GGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 750 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || || ||||| || || || || |||||||| Sbjct 749 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | || |||| ||||| ||||||||||| || |||||||| |||| Sbjct 241 CCCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 182 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| ||||| || ||| | || | || ||| ||||| Sbjct 181 CAGGGT----GCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAG 126 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| || ||||| || | | ||| || | | | ||||| | ||||| Sbjct 125 GGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCT 66 Query 16884 CCGTTTCCACGGTGATGGT-TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || | ||||| ||||| || || |||||||| Sbjct 65 CGACCTCGAGGGTGATGGTCTTCAACAGTCAGGGTTTTCACGAAGATCTGCAT 13 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| ||||| || | ||||||| ||||| ||||||||||| || ||||||||||||| Sbjct 1155 CCCACCTCGGAGACGGAGTACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1096 Query 16768 CATGGTTTTGGCGTCC-----TCCAATTGTTTGCCCGCATAAAT-AAGCCGCTGTTGGTC 16821 || ||| |||||| ||| ||||| || ||| | || || || ||| ||||| Sbjct 1095 CAGGGT----GCGTCCATCTTCCCAGCTGTTTCCCGGCAAAGATCAACCCTCTGCTGGTC 1040 Query 16822 CACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 ||| | || || ||||| || | | ||| || | | | ||||| | ||| Sbjct 1039 GGGAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGG 980 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || | ||| ||||| || || || || || || || || |||||||| Sbjct 979 CTCAACCTCGAGGGTAATGGTCTTACCAGTAAGGGTCTTCACGAAGATCTGCAT 926 >seq713515 Length=817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 428 AGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 487 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| || || ||| | ||| ||||| || Sbjct 488 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCC 547 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| || | |||||||| Sbjct 548 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGG 605 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || || |||||||| Sbjct 606 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 639 >seq235349 Length=927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| |||||| |||||||| | || ||||||||||| | Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||||||| | || || |||| ||||| | Sbjct 92 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 151 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | || ||| Sbjct 152 ATGCCCTCCTTGTCTTGGGTTTTGGC--CTTGACATTCTCAATGGTGTCACTGGACTCGA 209 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || | || |||||||| || Sbjct 210 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400935944967940