Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq382080 187 3e-42 seq436660 95.1 1e-14 >seq382080 Length=1803 Score = 187 bits (206), Expect = 3e-42 Identities = 294/417 (71%), Gaps = 3/417 (1%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||||| || |||| || || ||| |||||| ||||| | ||| || | ||||| Sbjct 942 TGTAAACTCTCATCTC-TGCTAATCAGTTCATTGGAAAATGTGAGACCAGGCATCAGTCT 1000 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 ||||| ||||||||| ||||| | ||||| |||| ||| || || ||||| || || Sbjct 1001 TCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCCAGTAAAGAAGATTCCTTCTACTGC 1060 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA-TCCATTTTAAAG 93284 |||||| || ||| |||||| || | | || || | | | |||| || | Sbjct 1061 TGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTCCTTTGTCCCCAATCCAACGCAAGG 1120 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || || ||||| | |||||| | ||||| || || | || | | || | Sbjct 1121 CCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTTCAATGGCACTGAAGAAAAATTCCC 1180 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 || | |||||| ||||| || || || | | | ||||||||||||| | | | Sbjct 1181 TTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAGGTATGT 1240 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||||| ||||||||||| || || ||||| | ||||| || || || |||||||| Sbjct 1241 TTTCCATGGCAATTTGGAAGCCATACAAACAGCGGGCTTCTGTAATGTGAACTTCTTGGC 1300 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 ||||| ||| || || |||||||| || || ||||| ||||| |||| ||||||| Sbjct 1301 TAAATCGCTCCACCAGGTTTTCATTTACGATGCCATCACATGCTACAAAGAAAGCCA 1357 >seq436660 Length=1326 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 106 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 165 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| | Sbjct 166 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTTATCTGAACTTCTTGGCTAAATCGC 225 Query 93473 TCTAC 93477 || || Sbjct 226 TCCAC 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551006759075440