Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq449898 102 7e-17 seq270171 100 2e-16 seq713515 98.7 8e-16 seq808566 89.7 4e-13 seq449207 89.7 4e-13 seq697174 87.8 1e-12 seq611773 82.4 6e-11 seq377023 82.4 6e-11 >seq449898 Length=3288 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| || | ||| | ||| || || |||||||||||||| || || | Sbjct 1237 CCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAA 1296 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| | ||||| |||| | || || | || || || |||||||| Sbjct 1297 GTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATT 1356 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 | ||| || || || || ||||| | ||| | || || | | ||| || || Sbjct 1357 CTTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCG 1416 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || || || |||||||||||||||||||| Sbjct 1417 AGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1460 >seq270171 Length=3188 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||| || || ||||| |||||||| || Sbjct 2546 ACCACCATGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 2487 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 2486 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 2427 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | | ||| || Sbjct 2426 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAAC 2367 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || |||||||| ||||||||||| Sbjct 2366 CTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2319 >seq713515 Length=817 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||||||||| || | ||| || |||||| || || || || Sbjct 443 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 502 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| || || ||||| ||||||||||| || ||||| || Sbjct 503 GCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 562 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 563 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 622 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 623 TTCACGAAGATCTGCAT 639 >seq808566 Length=7867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| | | ||| | || ||||| ||||| |||||||| || Sbjct 1341 ACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGA 1282 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| || ||||| ||||| | || || | || || || ||||| Sbjct 1281 CAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1222 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||| || | || || | | ||||| ||||| | ||| | || || | | ||| Sbjct 1221 AATTCCCTTCTTCTC--CTAGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 1164 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| ||||||||||| Sbjct 1163 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1114 >seq449207 Length=1366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| | | ||| | || ||||| ||||| |||||||| || Sbjct 356 ACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGA 297 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| || ||||| ||||| | || || | || || || ||||| Sbjct 296 CAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 237 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||| || | || || | | ||||| ||||| | ||| | || || | | ||| Sbjct 236 AATTCCCTTCTTCTC--CTAGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 179 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| ||||||||||| Sbjct 178 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 129 >seq697174 Length=16667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | | || || ||||| |||||||| || Sbjct 11239 ACCACCACGAAGTCTCAACACAAGATGAAGCCCGGACTCCTTTTGGATGTTGTAGTCAGA 11298 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | ||||| ||||| | || || | || || || ||||| Sbjct 11299 CAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 11358 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | ||| || Sbjct 11359 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGATCGTTCAAC 11418 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| || || || || || || |||||| ||||||||||| Sbjct 11419 CTCGAGGGTGACGGTCTTCCCTGTGAGGATTTTTATGAAAATCTGCAT 11466 >seq611773 Length=2016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||| || || ||||| ||||||||||| Sbjct 1460 ACCACCAGGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 1519 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | || || |||| | || || | || || || ||||| Sbjct 1520 CAAAGTACGCCCATCTTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 1579 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || | | ||| || Sbjct 1580 AATTCCTTCCTTATCCTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAAC 1639 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||| ||||||||||| Sbjct 1640 CTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1687 >seq377023 Length=3771 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| | |||||| || | || | ||| || || ||||| |||||||| || Sbjct 1660 ACCACCACGAAATCTCAACACAAGGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGA 1719 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| | ||||| ||||| | || || | || || || ||| | Sbjct 1720 CAAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAAG 1779 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || ||||| | ||| | || || | ||| || Sbjct 1780 AATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGATAGTTCAAC 1839 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| | || || || || || |||||||||||||||||||| Sbjct 1840 CCCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415828122969672