Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq345138 109 6e-19 seq235349 104 3e-17 seq187118 98.7 1e-15 seq416377 95.1 1e-14 seq449898 93.3 5e-14 seq311186 91.5 2e-13 seq650951 89.7 6e-13 seq473712 89.7 6e-13 seq437210 89.7 6e-13 seq291155 89.7 6e-13 seq422973 82.4 8e-11 seq87651 82.4 8e-11 seq59002 82.4 8e-11 >seq345138 Length=2957 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || | ||| || || || ||||| || ||||||||||| | || Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| |||||| |||| || | | ||||| || | || || Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| |||||||| |||||| | || ||||| || ||||| ||||| || Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATCTT 2544 >seq235349 Length=927 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | || || ||||| ||||| ||| ||| | || || ||||| |||| Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| || || || ||||| || |||||||||||| || Sbjct 92 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 151 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| | |||| |||| || | | ||||| || || || || Sbjct 152 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 211 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| |||||||| ||||| || || ||||| | ||||| ||||| || Sbjct 212 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATCTT 261 >seq187118 Length=2971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || || | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1052 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1111 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 1112 ATACTAACGAGGAT 1125 >seq416377 Length=912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||| ||||| || | ||| ||| | || || ||||| |||| Sbjct 549 CCGCCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 490 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||| || || || ||||| || |||||||||||| || Sbjct 489 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 430 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| | |||| |||| || | | ||||| || || || || Sbjct 429 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 370 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 |||| |||||||| ||||| || || ||||| | ||||| ||| Sbjct 369 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGC 325 >seq449898 Length=3288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| ||| | || Sbjct 1248 CAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATC 1307 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || | ||| || |||| || || |||| ||||| || | || | || ||||| || Sbjct 1308 TTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATC 1367 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | |||||| ||| | | | | || || || ||| || |||| |||||||| Sbjct 1368 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCTCGAGGGTGATGGT 1427 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || || || |||||||| || ||||| || Sbjct 1428 CTTCCCTGTGAGGGTTTTTACAAAAATCTGCATCTT 1463 >seq311186 Length=7699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4829 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4888 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4889 ATACTAACGAGGA 4901 >seq650951 Length=1531 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 281 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 222 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 221 TACTAACGAGGA 210 >seq473712 Length=1166 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 808 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 749 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 748 TACTAACGAGGA 737 >seq437210 Length=1130 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| | ||||||||||||||||||| |||||||||||| Sbjct 251 TCTCCCCGTCGGGGAATCGAACCCCGCTCTCCCGCGTGACAGGCGGGGATACTCACCACT 192 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 191 ATACTAACGAGGAT 178 >seq291155 Length=2315 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1179 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1178 TACTAACGAGGA 1167 >seq422973 Length=1992 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||| ||||| |||||||||| |||||||||| |||||||||||||||||| ||||||| Sbjct 1066 AATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAGGAT 1007 >seq87651 Length=1287 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 914 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 855 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 854 ATACTAACGAGGA 842 >seq59002 Length=2818 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||| ||||| |||||||||| |||||||||| |||||||||||||||||| ||||||| Sbjct 190 AATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTATACTAACGAGGAT 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537502234699040