Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq449898 102 8e-17 seq198121 98.7 1e-15 seq270171 93.3 4e-14 seq345138 87.8 2e-12 seq651517 84.2 2e-11 seq667311 82.4 7e-11 >seq449898 Length=3288 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || ||||||| || || | ||||| || ||| Sbjct 1267 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGAA 1326 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || | ||| || || |||||| ||||| Sbjct 1327 AAAATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATCCTGGATTTTGGCTTTTACA 1386 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 1387 TTTTCTATTGTATCCGGCGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 1446 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 1447 ACAAAAATCTGCAT 1460 >seq198121 Length=2544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| ||||| || | ||||||| || || ||||||||||| | Sbjct 1382 CCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAC 1323 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || |||||||| || | | |||| | | ||| ||||| ||||| Sbjct 1322 AGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1263 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 1262 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 1203 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| || || || || |||||||| Sbjct 1202 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 1156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | || | | | ||||| || || |||||||||||| | Sbjct 468 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 409 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| ||||| || || Sbjct 408 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 349 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 348 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 289 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 288 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | || | | | ||||| || || |||||||||||| | Sbjct 696 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 637 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| ||||| || || Sbjct 636 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 577 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 576 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 517 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| || || || || |||||||| Sbjct 516 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 470 >seq270171 Length=3188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||||||| || || | ||||| || | | Sbjct 2512 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 2453 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| || ||||| || || |||||| ||||| Sbjct 2452 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACA 2393 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 2392 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 2333 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2332 ACGAAAATCTGCAT 2319 >seq345138 Length=2957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 2314 GCCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 2373 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | ||||| |||| | | || |||||||| ||||| || || Sbjct 2374 CAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGG 2433 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || | | || | |||||| | | ||| || Sbjct 2434 GATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 2493 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || |||| || || || || |||||||| Sbjct 2494 CTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCAT 2541 >seq651517 Length=23778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||||||| || || | ||||| || ||| Sbjct 16894 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGAA 16953 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || ||||| ||||| || || |||||| ||||| Sbjct 16954 AAAATCAGTCTTTGCTGATCAGGAGG----CCTTCCTTATCCTGGATTTTGGCTTTTACA 17009 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 17010 TTTTCTATTGTATCTGACGGTTCAACCTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTT 17069 Query 138601 ACAAAAATCTGCAT 138614 | ||||||||||| Sbjct 17070 ATGAAAATCTGCAT 17083 >seq667311 Length=5630 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||||||| || || | ||||| || | | Sbjct 4180 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 4239 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || || | ||| || |||| || || |||||| ||||| Sbjct 4240 AAAATCAGTCTTTGCTGATCAGAAGGAATTTCTTCCTTATCCTGGATTTTGGCTTTTACA 4299 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||||| || | || || || || || |||||| Sbjct 4300 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 4359 Query 138601 ACAAAAATCTGCA 138613 || |||||||||| Sbjct 4360 ACGAAAATCTGCA 4372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491045404300320