Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq345138 116 3e-21 seq449898 102 8e-17 seq377023 100 3e-16 seq270171 100 3e-16 seq335148 96.9 3e-15 seq713515 95.1 1e-14 seq235349 95.1 1e-14 seq697174 91.5 1e-13 seq416377 87.8 2e-12 seq808566 86.0 6e-12 seq449207 86.0 6e-12 >seq345138 Length=2957 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || |||||||| || || ||||| || | Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | |||||| || || | |||| |||||||| || || || Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| ||||| | |||| |||||| | |||||| Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2494 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| || || || || |||||||| Sbjct 2495 TCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCAT 2541 >seq449898 Length=3288 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 126888 CACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCA 126947 |||| || | || |||||| | ||| | ||| ||||| |||||||| ||||| || || Sbjct 1235 CACCACGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACA 1294 Query 126948 TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTA 127007 || || ||| || | |||||| |||| | |||| || |||||||| ||||| | Sbjct 1295 AAGTACGCCCATCTTCCAACTGTTTGCCAGAAAAAATCAGTCTTTGCTGATCAGGAGGAA 1354 Query 127008 TGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTT 127067 | | ||||| ||| |||||| || | | ||| | || |||| || || | Sbjct 1355 TTCTTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGGCGGTTCAACCT 1414 Query 127068 CGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||| | || || || || || |||||||||||||||||||| Sbjct 1415 CGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1460 >seq377023 Length=3771 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || |||| |||||| | || | ||| ||||| ||||| || ||||| || Sbjct 1657 TGCACCACCACGAAATCTCAACACAAGGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTC 1716 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || | ||| || | |||||| ||||| | |||| || |||||||| || Sbjct 1717 AGACAAAGTATGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGG 1776 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCT 127061 | | || || ||||| ||| |||||| || | | ||| | || |||| || | | Sbjct 1777 AAGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGATAGT-T 1835 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||| ||| | || || || || || |||||||||||||||||||| Sbjct 1836 CAACCCCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACAAAAATCTGCAT 1887 >seq270171 Length=3188 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 2548 GCACCACCATGGAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCA 2489 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 2488 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 2429 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| |||||| || | | ||| | || |||| || Sbjct 2428 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 2369 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 2368 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2319 >seq335148 Length=7748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 |||| |||| ||| || | |||| ||||| ||| | || |||||||| || || || Sbjct 7071 CTATGATGCT--ACCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTT 7128 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 || || | ||||| ||| || |||||||| || || | |||| |||||||| Sbjct 7129 ATAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTG 7188 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGT 127056 | || || |||||||||||||| |||||| ||||| | |||| |||||| | Sbjct 7189 GTTAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACT 7248 Query 127057 ACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | || ||| | || ||||| ||||| || || || || |||||||| Sbjct 7249 GGGCCTGACCTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 7305 >seq713515 Length=817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| ||||| || | ||||| ||| || ||||| || || Sbjct 443 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 502 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | ||||||||| ||||| ||||| || || ||| ||| || ||| Sbjct 503 GCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 562 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || |||| ||| | || ||||||||||| || Sbjct 563 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 622 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 623 TTCACGAAGATCTGCAT 639 >seq235349 Length=927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | || ||||| ||| | || |||||| | || || ||||| || Sbjct 32 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAG 91 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || || | |||| ||||||| ||||| | Sbjct 92 ACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAG 151 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| | |||| ||||| | || | |||||| | |||||| Sbjct 152 ATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACC 211 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| ||||| || || | || |||||||| Sbjct 212 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 258 >seq697174 Length=16667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | | ||||| ||||| || ||||| || Sbjct 11237 GCACCACCACGAAGTCTCAACACAAGATGAAGCCCGGACTCCTTTTGGATGTTGTAGTCA 11296 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | |||||| ||||| | |||| || |||||||| ||| Sbjct 11297 GACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 11356 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| |||||| || | | ||| | || || | | || Sbjct 11357 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCTGATCGTTCA 11416 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || || || || || |||||| ||||||||||| Sbjct 11417 ACCTCGAGGGTGACGGTCTTCCCTGTGAGGATTTTTATGAAAATCTGCAT 11466 >seq416377 Length=912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||| | || || ||||| || | ||||| | Sbjct 537 CGCAGCACCAGGTGGAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGTGCGGCCA 478 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || | |||| ||||||| ||||| | |||||||||||| Sbjct 477 TCTTCCAGCTGTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAGATGCCCTCCTTG 418 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || | |||| ||||| | || | |||||| | |||||| |||| ||| | Sbjct 417 TCTTGGGTTTTGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACCTCGAGGGTGATG 358 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || ||||| ||||| || || | || |||||| Sbjct 357 GTCTTGCCTGTCAGGGTCTTCATGAAGATCTGC 325 >seq808566 Length=7867 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || ||||| | ||| | || || || ||||| || ||||| || Sbjct 1343 GCACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCA 1284 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || |||||||| ||||| | |||| || |||||||| ||| Sbjct 1283 GACAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 1224 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||| ||| ||| |||||| || | | ||| | || |||| || Sbjct 1223 GGAATTCCCTTCTTCTCCTAGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 1164 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 1163 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 1114 >seq449207 Length=1366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || ||||| | ||| | || || || ||||| || ||||| || Sbjct 358 GCACCACCAGGAAGTCTCAACAGAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCA 299 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || |||||||| ||||| | |||| || |||||||| ||| Sbjct 298 GACAGAGTACACCCATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGA 239 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||| ||| ||| |||||| || | | ||| | || |||| || Sbjct 238 GGAATTCCCTTCTTCTCCTAGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCA 179 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || |||||||| ||||||||||| Sbjct 178 ACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470502062177440