Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq631619 111 2e-19 seq629557 87.8 2e-12 >seq631619 Length=7703 Score = 111 bits (122), Expect = 2e-19 Identities = 493/764 (65%), Gaps = 34/764 (4%) Strand=Plus/Plus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 || |||||| ||| ||||| | | | ||| | | |||||||| | || || ||| Sbjct 1874 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAATGTAGATGTTGCTGGTATAAGGT 1933 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 |||| | | |||||||| |||||||| || || || | || || | |||||| || || Sbjct 1934 TCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGCAGCAGTAGTCATTGGGGCAATA 1993 Query 106016 AAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072 | | |||||| | | ||| |||| | | || |||||||||| | |||||| Sbjct 1994 AGTAAACTGTTTCTTACACCATACTTTGCAATCTTG---TCCTTGAGAAGTTTCCAGTCC 2050 Query 106073 TA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 | | | | | || | || |||| ||| ||| | ||||| | ||| | | Sbjct 2051 CACAGGTCTG-TGGGAGTAACATTCC-ACACGTCATACTGAAGAATTTCTTTGCTTACTG 2108 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 106190 |||| |||||| | || || || | ||| | ||| |||| |||||||| || |||| Sbjct 2109 GAGAGCCCTCATAGGTTTCCTATGGACCATACTCTTTGGCCAGGTCACAGCTGGCTTCCA 2168 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA- 106249 || | | | ||| || |||| |||||| | ||||| || | | || || | Sbjct 2169 AGGCTCCATAATAAATAGTTTGAAAGATTTGCTTATTCAGTAACTGGACCTC---TGGAC 2225 Query 106250 --TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 ||||||| || | ||| ||||| || | || ||| ||||||| || | |||| Sbjct 2226 TTTCAAATGGATATCTCATCAAGATAAAAGCAACAGCCAGAACTTGAACCCCAATTCCAA 2285 Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGT 106364 | || || || |||| || | || | ||| || || || | ||||| | Sbjct 2286 TGGGGTGATGGCGTTTATTTGA--TACGTAT-GCCTCTGGAATAGGGTAGTAGTTTCTAT 2342 Query 106365 CAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCAT 106421 ||| | | || | | ||| | |||||| ||| |||| |||| || || | | Sbjct 2343 TAATAATTTTATTCA-AGTTTCG--AACAATGACTTCAGTGACTTCAGCCAGCTTCTTAA 2399 Query 106422 AATCAAAAGTGCGAGTCTCTTCAT-TGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480 | || || || || | | || |||||||| | ||||| | || ||||| || Sbjct 2400 AGTC----GTACGTGTGTTCTGATGTGACATACATATTCAGGGCCAGGGAAGCCAAGTTA 2455 Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540 ||||| || ||| || || || ||||||| |||||||| |||| |||| | Sbjct 2456 CAAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCAT 2515 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || | |||| |||| ||||| ||||| | || || | || |||||||||||| Sbjct 2516 TTGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTACAGGAATTTTTGTAGAGCATG 2575 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||| || | ||||| ||||| |||| | ||| || | ||| Sbjct 2576 TAGGG-GTGTCAGTCTCTGTCTGAGACTCAATAATAGCATACCA 2618 >seq629557 Length=4010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| |||| | || || || || Sbjct 1408 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 1349 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| || || | ||| ||||||||||||||||| || || Sbjct 1348 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTAGGGGGTACC 1289 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||| ||||| |||| | ||| || | ||| Sbjct 1288 AGTCTCTGTCTGAGACTCAATAATAGCATACCA 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583778582591440