Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq503551 84.2 2e-11 seq482225 84.2 2e-11 seq472869 84.2 2e-11 >seq503551 Length=2809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 404 GGCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCC 463 ||| ||||||||||| || ||||| || || || || ||||| |||||| || ||| | Sbjct 523 GGCCGCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTC 582 Query 464 ATCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 | ||| | | ||| | || ||||| || | || || |||||||| |||||||| Sbjct 583 CTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATATCCGCAGGGTAGAAGCC 642 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAAC 583 |||||| || |||| || | | |||||||| || | || ||||||||| | Sbjct 643 CAGGGCCCAGCACCTTAGGGTGGCCTCACGGTCAGAGGTGGGGTGGTGGGTCACGTGTGC 702 Query 584 CTGTGG 589 || ||| Sbjct 703 CTTTGG 708 >seq482225 Length=2605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||| | ||||| | | ||| || | | ||| | Sbjct 706 CCTCGTGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCGGAAGGCACCACCACGGCCG 765 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| || || || || ||||| |||||| || ||| | | | Sbjct 766 CCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 825 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 826 TCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCCGCAGGGTAGAAGCCCAGGG 885 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || | | ||||||| || | || ||||||||| |||| || Sbjct 886 CCCAGCACCTCAGGGTGGCCTCCCGGTCAGAGGTGGGGTGGTGGGTCACGTGCACCTTTG 945 Query 589 G 589 | Sbjct 946 G 946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 820 GCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGT 879 |||||||||| | || || || |||| | | |||||||| ||| || ||||| | Sbjct 1982 GCGGTCCAGGAGCGCAGGTCCTCGTTCAGGGCGAGGTAGTCCCGGCCGTCGTAGGCGTCC 2041 Query 880 TGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGG 939 |||| ||| || || |||||| || ||||||||||| | |||||| |||||| ||| Sbjct 2042 TGACGGTACCCGCGGAGGAGGCGCCCGTCCGGCCCCACTTCGCAGCCGAACATCCTCTGG 2101 Query 940 AGGGTATG 947 ||||| || Sbjct 2102 AGGGTGTG 2109 >seq472869 Length=7133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 404 GGCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCC 463 ||| ||||||||||| || |||||||| || || || ||||| |||||| || ||| | Sbjct 3225 GGCCGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTC 3166 Query 464 ATCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 | ||| | | ||| | || ||||| || | || || |||||||| |||||||| Sbjct 3165 CTGGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCCGCAGGGTAGAAGCC 3106 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAAC 583 |||||| || | || || | | |||||||| || | || ||||||||| | Sbjct 3105 CAGGGCCCAGCACCTCAGGGTGGCCTCACGGTCAGAGGTGGGGTGGTGGGTCACGTGTGC 3046 Query 584 CTGTGG 589 || ||| Sbjct 3045 CTTTGG 3040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393670386410736