Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq382080 223 4e-53 seq517911 107 2e-18 seq419922 86.0 7e-12 seq101110 86.0 7e-12 >seq382080 Length=1803 Score = 223 bits (246), Expect = 4e-53 Identities = 506/748 (68%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 623 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 681 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | ||| | ||||| |||||||| ||||||||||| | | | | ||| || Sbjct 682 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAAACCTCGCTAAATC 741 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | |||| || ||| |||| || ||||| || ||||| | ||| | | ||| Sbjct 742 CCAGTTCCAGCATAAGTCTATTGGCCACAAACTCAATGTACTGCTTCATCAAG-CGCAGT 800 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || |||| || || || || | || ||| ||| ||| | | || | | | ||| Sbjct 801 TCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGACA 860 Query 37110 GCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAA---TATTT 37165 |||| ||| || | | | ||| ||| | | || ||| | || | ||| Sbjct 861 GCATTGATAATGATTT---CTTTCACTCTCTGCTCTAACGG-ATAGTGTAGCAGGTGTTT 916 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | | |||| || ||| ||||||| |||||||| || |||| |||||| || Sbjct 917 GAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGGA 976 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | | || || || | ||| ||||| |||||| || || Sbjct 977 AAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGCC 1036 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-C 37344 || |||||| || ||||| ||||||||||| |||||| |||| || | || | | Sbjct 1037 AGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCTC 1096 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| | |||||||||||| || ||||| || |||| Sbjct 1097 CTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATGGTTT 1156 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || | |||| ||| | |||||| |||| | || ||||| ||||| || | Sbjct 1157 CAATGGCACTGAAGAAAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 1216 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 |||||||||||||||| | || ||||| || || || || || ||||| ||||| | | Sbjct 1217 AACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGGG 1276 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 |||| | |||| ||||| || | ||| | || | | ||||||||| || || ||| Sbjct 1277 CTTCTG-TAATGTGAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 1335 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACAT 37611 |||| ||| |||||||||| ||||||| Sbjct 1336 TCACATGCTACAAAGAAAGCCAGAACAT 1363 >seq517911 Length=2699 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || || Sbjct 1250 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 1309 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| || Sbjct 1310 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1369 Query 37320 ACAA 37323 |||| Sbjct 1370 ACAA 1373 >seq419922 Length=2112 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 1868 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1926 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||| | ||||| |||||||| ||||||||||| Sbjct 1927 CCAGTAAAATATTCTCCATAAAGTCAAATGGATT 1960 >seq101110 Length=3331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 1595 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1537 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 1536 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 1503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586090025216240