Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq345281 129 5e-25 seq242529 116 3e-21 seq732468 109 4e-19 seq675419 89.7 4e-13 seq135672 89.7 4e-13 >seq345281 Length=2749 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||||||||| || || ||||| || || | Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | | ||||| ||||| || ||||| || Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2471 >seq242529 Length=4194 Score = 116 bits (128), Expect = 3e-21 Identities = 178/250 (71%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 1133 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 1192 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 1193 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 1252 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| || | ||||| || |||| | ||||| || || | Sbjct 1253 TTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 1311 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 ||| ||| |||| ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 1312 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGG-GACA 1364 Query 112319 CGGCCACGAT 112328 | || ||||| Sbjct 1365 CAGCGACGAT 1374 >seq732468 Length=3300 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || ||||| ||||||||||| || || || || |||| ||| || |||| Sbjct 2557 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2498 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2497 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2438 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || || |||| ||||||||| || Sbjct 2437 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2398 >seq675419 Length=1260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/242 (70%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 940 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 881 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||| ||||||||| || ||||| || || ||||| |||||||| ||||| || Sbjct 880 TAAAGGCTGATTCTTTTCAGGAATGGAAAATCAGGTCTTCCTACCCATAATCACGGTATT 821 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| | | ||||| || |||| | ||||| || || | Sbjct 820 TTGTTTACCTTCTACTGAAGAAATTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 762 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 112316 || ||| | |||| ||||| || || || || |||||||||||| ||| ||||| Sbjct 761 TGAG-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGGGACA 708 Query 112317 CA 112318 || Sbjct 707 CA 706 >seq135672 Length=2989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 112099 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 112158 || || || || || ||||| |||| || || | || | | ||| | ||||||||| Sbjct 1418 TCCTTGAGTTCTCTACTGAGAACTAAATTAATTTTATCCTTTAAAGGCCAATTCTTTTCA 1359 Query 112159 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 112218 || ||||| ||||| ||| | ||||| |||| | ||||| || ||| |||| | Sbjct 1358 GGAATGGAAAACCAGACCTTCCCCCCCATAGTCACGATATTCTGTTTACCTTCTACTGTA 1299 Query 112219 GACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCA 112277 | || | ||||| || |||| || ||||| || || | ||| ||| |||| Sbjct 1298 GCGGTGGTGGTCATCCTCTGGAAA-TGCTTAAATTCATTCCTGAGT------GGAAGCCA 1246 Query 112278 CGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATA 112329 ||||| || ||||| || ||||||||||| ||||| |||||| |||||| Sbjct 1245 GGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGG-GACACGGTGACGATA 1195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404429367412838