Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq749787 93.3 1e-14 seq339167 80.6 7e-11 >seq749787 Length=1786 Score = 93.3 bits (102), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||||| | || || || || || || | Sbjct 1627 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCAAAACACTTCG 1568 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| ||| Sbjct 1567 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTAT 1508 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | || || |||||| | ||||| ||| | | Sbjct 1507 TTAATTTTGGCAAAGAAAAG---TTTGAAGTTAAAAAAGGTGACCGAATTGCACAGCTCA 1451 Query 1135 TTTGTGAA 1142 |||||||| Sbjct 1450 TTTGTGAA 1443 >seq339167 Length=3377 Score = 80.6 bits (88), Expect = 7e-11 Identities = 182/271 (67%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| |||||| || || || || || || | | Sbjct 1014 TTCCTTCTGGGTGTTATGGAAGAGAAGCTCCACTTTCTGGCTTGGCTGCAAAACACTTCA 955 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 954 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 895 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGA-TAGGATTGCTCAGTTA 1133 |||||||| || || ||| | | | || || |||||| || ||||| ||| | Sbjct 894 TTAATTTTGGCAAAGAAAAG---TCTGAAGTTAAAAAAGGTGACCAGAATTGCACAGCTC 838 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAA 1193 ||||||||| | | ||| ||| || || ||| | || || || | ||| Sbjct 837 ATTTGTGAACAAATTTTTTGCCCAGAAATAGAAGAAGTTCAAGGTTTGGATGACACTGAA 778 Query 1194 AGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||| | ||| ||||| || || |||| Sbjct 777 CGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137296594314936