Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq314321 98.7 2e-15 seq629557 95.1 2e-14 seq152946 87.8 3e-12 >seq314321 Length=983 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | |||||| || ||||||||||| |||| || | | ||||| || ||| Sbjct 539 CATGACTTTCTGTTTAAGCTGGGCCACCTGTTCCCTAAGCATGTTGGCGGTGGAGGCCAG 480 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | | || | |||||||| |||||||| || ||||| | |||||| Sbjct 479 CTCAGAGTTCTGCGCTTTCAAGGTTTTCACTTTTTCCTCCAGTCGGGCGATCCTTTCCAG 420 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | ||||| |||| ||| || | |||||||| | | ||| | |||||||| Sbjct 419 CTTCCTTTTCCGGCACTTGGAGGCAGCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTT 360 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || |||||| ||||||||| || || ||| Sbjct 359 GATCCGCTCCTGGGACTCCATGTCTATGGGGGAC 326 >seq629557 Length=4010 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 1395 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 1336 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||||||||||||||||| || |||||| ||| Sbjct 1335 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTAGGGGGTACCAGTCTCTGTCTG 1277 Query 213647 GGAC 213650 ||| Sbjct 1276 AGAC 1273 >seq152946 Length=1558 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 313 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 254 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||||||||||| || || |||| |||||| ||||| Sbjct 253 TCCGTGTTCTGGCTCTTGAGTGTTTTCACTTTCTCTTCGAGGCGCGAGATGCGCTCCAGC 194 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| ||| || |||| ||| | | |||||| | | | ||| || ||| | || Sbjct 193 TTGCGTTTGCGTCACTTGGAGGCGTCGATGCGGTTGCCCAACCCCTTGCGCTCCCCATTA 134 Query 241595 ATGCGTTCCTGGTCCTCCATGTC 241617 ||||| ||||| |||||||| Sbjct 133 ATGCGCTCCTGTGTGTCCATGTC 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921739991575040