Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq551660 309 3e-79 seq55271 102 9e-17 seq686072 93.3 5e-14 >seq551660 Length=10507 Score = 309 bits (342), Expect = 3e-79 Identities = 664/984 (67%), Gaps = 14/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || || | ||| |||| ||| || ||| | || |||| || ||||| || Sbjct 2723 CAGGTGCTCATCTAAACACTGGATGGC-AAGTGGTCGATATCCACGTCAAACTTATTGGC 2781 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| |||| || ||| || || || || | ||||| | ||| || Sbjct 2782 AAACAGGTGGTGCGCGT-----AGCATC-AGCTCAAATCGCCAGCTCCGAAAATGCACAC 2835 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| ||| |||| |||||||| | || || || | || |||||||| Sbjct 2836 GGAGCGGACGTGCACCCCGCTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCACCTTC 2895 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||| |||| || | ||| || | ||| ||||||||||| ||| || || | Sbjct 2896 AAAGTACTGC-ACTTGACCAGCCTCGCCACCGCGTGCATGTCGGACAAGTCATACTTATG 2954 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || || | || || || |||| || | ||| | |||||||| | || ||| Sbjct 2955 GCTTACGGACACTGAGCCTGGCACTTCGGGGATCCTCTGGATTGTGGCCCAGACGTATTC 3014 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCGC 160409 || |||||||| ||||| | | ||| ||||||||| | ||| | | | | | Sbjct 3015 ATCTGGGCTGTAGGTGTCTTGTGCCCACGCCATGAACTTTTGGATCTTTTCATTTTCT-- 3072 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || || | || || || | || || ||||| || ||||| ||||| || || Sbjct 3073 AGCACATACCCCACATATCCCCTACTGACCACGAAGTAGGCACTGCCTGAGAAAATGGGC 3132 Query 160470 ATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | || || || | |||| | || ||||| | || || ||||| | Sbjct 3133 GTTTCCAGCGGAGGACGCAT-TTTGACGGTCCCCGTGTTGGTCAGTTTCCCATTCACGAC 3191 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 |||| |||| ||||| || | ||| | | |||||| | || || || || | Sbjct 3192 TGCGTAATGCTTTTTCCATCTTTCTTCCTTATTGGATGGCATCCTCTCGGTTTCCAGGTT 3251 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| |||| | |||||| |||| | |||| || || ||||| || || | ||||| Sbjct 3252 GTTTTCACCCATTAACGATTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAA 3311 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || ||| || | || |||| ||||||||| | | ||||| || ||||| | Sbjct 3312 ATCCTGACCACAGAGATTGATCAAGTACTTCCAGTGTGTGCTCATTCGGTAGAGGTCTTT 3371 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | ||| ||||| || || ||||| || || || || ||| |||| | | Sbjct 3372 CATGCAGTTGAGATCGGCCTGAACTCGACTCCACGATGCATAAACCACGCTCTCCAACTG 3431 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 ||||||||| ||||||||| |||||| ||| ||| | |||||| ||||| Sbjct 3432 ACTGGCCACGAAGACGTTACGGAAACAGGACGTGATGCTGGTCACCGCAGCTAAGAAGGA 3491 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 || || | ||||| ||||||||| | |||||| | ||||||||| |||||||||||| Sbjct 3492 CTCCTCTGACTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCCT 3551 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | ||||||||| || || |||||||| Sbjct 3552 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACGATAGAATATGCGATCGGAAA 3611 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | ||| || ||| |||| | | || || ||| ||||||| ||| || Sbjct 3612 CTCCGCCTCTTCTTCACTAAGGGGTTCTACAATATATTTGCGCCTCTTGATGAAAGAAGG 3671 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| |||||||| ||||| Sbjct 3672 GCAATCCGAGGTCATGTTTATATA 3695 >seq55271 Length=871 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 581 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 522 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | ||| | ||||| | | || Sbjct 521 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 462 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||| | Sbjct 461 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 402 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 401 AGATAAAATTTACA 388 >seq686072 Length=2261 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| || |||||| | || || ||| |||||| || || |||| ||| ||| Sbjct 537 CCTTTGCTCAGGGTTTGCTTGAAGTTGGTCACACTTCCCAGGTGCAGCACCTGGCAGATC 478 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| || || || || |||| || ||||| || | | |||| || ||| Sbjct 477 ACCTCC---TTCCCAACCTGTTTCTTGGGGTCTTTGACATAGAGGGTGCTGGTGACAGAC 421 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || ||||| | | ||| | | | || ||||| ||||||||||| | || ||| Sbjct 420 GTGGTCCCATTTGGGTTTAACAGACTCTCAGTACTGTTGTCAATCCCTGACACCGCAACC 361 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 |||||| | | ||| || | || || || || |||||||| || ||||||| Sbjct 360 TTCCAGGAGAGTACTGGGGGTGGGCGAGCAGTGGCAGAGCAAGTGATATTTA 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571151139868560