Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq631619 86.0 3e-12 >seq631619 Length=7703 Score = 86.0 bits (94), Expect = 3e-12 Identities = 234/354 (66%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||||| |||||| | ||| | || | ||| ||||| | |||||| || Sbjct 2769 CATGAAGAGATCTGAAATCCAAAGGGCAAAGAAAAGATCCCTCGCATACTGTTCTTCCTT 2828 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| |||| ||| | || ||||| || ||| | ||| | |||| | | Sbjct 2829 TCCTGTG-TTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCTAAGGTTTCAGGT 2887 Query 26052 AGATAGCAAAACTACCTTTT--CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 | |||||||| || ||| || |||||||||||||||||||| || || | Sbjct 2888 AAATAGCAAATGCCCCAAGAAGCTTGTT--TCCACCTTGATCTACGTATCGAGCTGTATT 2945 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 | || | ||| ||| |||||| || | ||| | ||| || || || | | ||| | Sbjct 2946 ACTGTATACTCTCAGCATTGGTACAAGGCCATTGGAATTGCCATTAGTCCCAGCAATGTA 3005 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 | || || | | |||| || || ||| ||||| ||||| | || ||||| Sbjct 3006 GCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCAGACTTAGAAAT 3065 Query 26230 AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||||| | | ||||| |||| |||| ||||| ||| ||||||| Sbjct 3066 CAAAGCACATTGCTTTAGAGTATCATAAATCCCTTCAATGCTGTCATCTTTCAT 3119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250446400571450