Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq198121 89.7 1e-12 seq364364 86.0 1e-11 >seq198121 Length=2544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 ||||| || | ||| | |||||| ||| || || ||||| | || || |||| ||| Sbjct 1364 ACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1305 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | |||||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 1304 AGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 1245 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || || || || | || | || || || || || ||||| ||| Sbjct 1244 ATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTA 1185 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | || |||||||| Sbjct 1184 CCAGTCAGGGTCTTCACGAAGATCTGCAT 1156 >seq364364 Length=1710 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||| || ||||| | || | |||| || || |||| |||||| || ||||| Sbjct 1184 CCACTCCTCAGACGGAGAACCAGGTGTAGAGGAGGTGCTTTCTGGATATTGTAGTCAGAA 1243 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| ||||| || ||||| ||| Sbjct 1244 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGGGGT 1303 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || ||| || |||| || | || | || || Sbjct 1304 ATGCCTTCTTTATCCTGGATCTTAGCCTTCACATCCCCAATGGTGTCACTGGGGTCCACC 1363 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || ||| | || ||||| || | |||| ||| ||||||||||| Sbjct 1364 TCTAGGGTGATGCTCTTGCCAGTCAAGGACTTAACAAAGATCTGCATTTT 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973871844668100