Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq377023 100 2e-16 seq270171 89.7 4e-13 seq713515 84.2 2e-11 seq651517 84.2 2e-11 >seq377023 Length=3771 Score = 100 bits (110), Expect = 2e-16 Identities = 171/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| ||||| | ||||| || ||||| ||| ||| || || Sbjct 1890 AAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGGGGTTGAA-CT 1832 Query 107613 GGCG-ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 || |||| | | | |||||| || || ||||| ||||| | | || Sbjct 1831 ATCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCTTCCTGA 1772 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| ||||| |||| ||| || |||||| |||| || | | || || | ||||| Sbjct 1771 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATACTTTGTCTGACTA 1712 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG-GGGAAATAATA 107790 |||||| ||||||||||| ||| | ||| | ||||||||||| || || || |||| | Sbjct 1711 CAACATCCAAAAGGAGTCCACGCTTCACCTTGTGTTGAGATTTCGTGGTGGTGCATAAGA 1652 Query 107791 AAAA 107794 |||| Sbjct 1651 AAAA 1648 >seq270171 Length=3188 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | ||||| || ||||| ||| |||| || | Sbjct 2316 AAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCG 2375 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| ||||| | || ||| Sbjct 2376 TCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 2435 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| ||| || |||||| |||| || | || || | |||||| Sbjct 2436 CAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 2495 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||| ||||||||||| ||| | || | ||||||||| Sbjct 2496 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 2534 >seq713515 Length=817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| |||| | | Sbjct 639 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 580 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| |||||||||||| | || |||||| Sbjct 579 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGATCAG 520 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | ||||||||| Sbjct 519 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 460 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| ||||| |||| Sbjct 459 ATTCAGAAAGAGTCTACTCTGCACCTGGT 431 >seq651517 Length=23778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| | ||||| | ||||| || ||||||||| |||| || | Sbjct 17086 AAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATTACCCTCGAGGTTGAACCG 17027 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || || ||||| |||||| | | ||| Sbjct 17026 TCAGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGCCTCCT----GAT 16971 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| |||| | | || |||||| |||| || | || || | |||||| Sbjct 16970 CAGCAAAGACTGATTTTTTCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTAC 16911 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 ||||| ||||||||||| ||| | || | ||||||||| | || || Sbjct 16910 AACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGACTCCGTGG 16864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394788408281134