Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq350439 98.7 1e-15 seq808566 93.3 4e-14 seq449207 93.3 4e-14 seq270171 91.5 1e-13 seq611773 87.8 2e-12 >seq350439 Length=8302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| || || || ||||| |||||||| || || || ||| ||||| | || Sbjct 6612 ATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACTCCCATCTTCCAACTG 6553 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||| |||||| | ||||| | ||||||||| ||||| || ||||| || || ||||| Sbjct 6552 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 6493 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||||| | | | ||| |||| |||| || || | ||| || ||||| || || Sbjct 6492 GGCTTTTACATTTGATATCGTATCTGACAGTTCAACCTCGAGAGTGACGGTCTTCCCTGT 6433 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||||||||| || ||||| Sbjct 6432 GAGGGTTTTTACGAAAATCTGCAT 6409 >seq808566 Length=7867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 1317 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 1258 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 1257 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTT 1198 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||||| | ||| | || || | ||||| || || | || | ||||| || || Sbjct 1197 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 1138 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||||||||| || ||||| Sbjct 1137 GAGGGTTTTTACGAAAATCTGCAT 1114 >seq449207 Length=1366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||||| ||| ||||| ||||| |||||||| || || || | | ||||| || || Sbjct 332 ATGAAGTGTGGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTG 273 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 ||| |||||| | ||||| | ||||||||| ||||| || || | || || ||||| Sbjct 272 TTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTAGATTTT 213 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 ||||| | ||| | || || | ||||| || || | || | ||||| || || Sbjct 212 GGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 153 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 | ||||||||||| || ||||| Sbjct 152 GAGGGTTTTTACGAAAATCTGCAT 129 >seq270171 Length=3188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| |||||||| || || || | | || Sbjct 2531 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATC 2472 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||| |||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 2471 TTCCAACTGTTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2412 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||||| ||||| | ||| | || || | ||||| || || | || | || Sbjct 2411 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGT 2352 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||||||| || ||||| Sbjct 2351 CTTCCCTGTGAGGGTTTTTACGAAAATCTGCAT 2319 >seq611773 Length=2016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| ||||||||||| || || | | || Sbjct 1475 CAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATC 1534 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | || || ||||| | ||||| | ||||||||| ||||| || ||||| || || Sbjct 1535 TTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1594 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 | ||||| ||||| | ||| | || | | ||||| || |||| || | || Sbjct 1595 CTTGATTTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGT 1654 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||| ||| || ||||| Sbjct 1655 CTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408144559200