Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq101141 93.3 4e-14 seq101166 89.7 5e-13 >seq101141 Length=1456 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| |||| ||| ||||| | ||| | || ||| |||| ||||| || Sbjct 939 TCCAGCATATGGGGACCTACCTGTGATGGGCTTGATCGGATCGTTGAGCGCTGTGACCTA 880 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || |||||||| ||| | | |||||||||||||||||||||| || | Sbjct 879 CCTGAAATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 821 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| |||| || || || || || ||| || | || | | ||||||| || |||| Sbjct 820 TGCTGCTTCTACTTTCAATGGGTT-CCAGAGGCCGACCATCTACTATGTGATGTCAG 765 >seq101166 Length=1854 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| |||| ||| ||||| | ||| | || ||| |||| ||||| || Sbjct 1279 TCCAGCATATGGGGACCTACCTGTGATGGGCTTGATCGGATCGTTGAGCGCTGTGACCTA 1220 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || |||||||| ||| | | |||||||||||||||||||||| Sbjct 1219 CCTGAAATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458672542114080