Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq311186 109 7e-19 seq473712 105 9e-18 seq291155 105 9e-18 seq650951 104 3e-17 seq87651 104 3e-17 seq437210 98.7 1e-15 seq187118 98.7 1e-15 seq428056 96.9 4e-15 seq422973 95.1 2e-14 seq59002 95.1 2e-14 seq776954 86.0 8e-12 >seq311186 Length=7699 Score = 109 bits (120), Expect = 7e-19 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 8641 GGCTGCCGATGC-CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGG 8699 ||||||| || |||| ||||||||||||||||||| ||||| |||| ||||| | ||| Sbjct 4919 GGCTGCCTATCAGCTTACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGG 4860 Query 8700 GAGACCGGGGTTCGATTCCCCGACGAGGAG 8729 ||||||||||||||||||||||||| |||| Sbjct 4859 GAGACCGGGGTTCGATTCCCCGACGGGGAG 4830 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4901 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4842 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 4841 CCCGACGGGGAG 4830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4830 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4889 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4890 TACTAACGAGGA 4901 >seq473712 Length=1166 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 736 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 795 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 796 CCCCGACGGGGAG 808 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 737 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 796 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 797 CCCGACGGGGAGG 809 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 808 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 749 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 748 TACTAACGAGGA 737 >seq291155 Length=2315 Score = 105 bits (116), Expect = 9e-18 Identities = 74/82 (90%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 11722 TAAC-CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGG 11779 |||| || |||||||||||||||||||| ||||| |||| ||||| | |||||||||||| Sbjct 1158 TAACGCCTGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGG 1217 Query 11780 GTTCGATTCCCCGACGAGGAGG 11801 |||||||||||||||| ||||| Sbjct 1218 GTTCGATTCCCCGACGGGGAGG 1239 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1167 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1226 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1227 CCCGACGGGGAG 1238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1179 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1178 TACTAACGAGGA 1167 >seq650951 Length=1531 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 209 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 268 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 269 CCCCGACGGGGAGG 282 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 210 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 269 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 270 CCCGACGGGGAG 281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 281 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 222 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 221 TACTAACGAGGA 210 >seq87651 Length=1287 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 842 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 901 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 902 CCCGACGGGGAG 913 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/77 (90%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11726 CCAG-TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 837 CCAGCTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 896 Query 11784 GATTCCCCGACGAGGAG 11800 ||||||||||| |||| Sbjct 897 AATTCCCCGACGGGGAG 913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 139349 ACAA-CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAAC 139407 |||| |||| ||||||||| | |||||||||||||||| | |||| |||||||| |||| Sbjct 918 ACAATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 859 Query 139408 CACTATACTAACGAGGA 139424 ||||||||||||||||| Sbjct 858 CACTATACTAACGAGGA 842 >seq437210 Length=1130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||| ||||||||||||| Sbjct 179 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGAGCGGGGTTCGATTC 238 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 239 CCCGACGGGGAG 250 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||| ||||||||||||| Sbjct 179 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGAGCGGGGTTCGATTC 238 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 239 CCCGACGGGGAG 250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||| ||||||| | |||| |||||||| | ||||||| Sbjct 250 CTCCCCGTCGGGGAATCGAACCCCGCTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 191 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 190 TACTAACGAGGAT 178 >seq187118 Length=2971 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1124 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1065 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 1064 CCTGACGGGGAG 1053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1124 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1065 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 1064 CCTGACGGGGAG 1053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1053 CTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1112 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 1113 TACTAACGAGGAT 1125 >seq428056 Length=1957 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| || | ||||| | |||||||||||||||| ||| Sbjct 171 TTCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCGGGAGACCGGGGTTCAATT 230 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 231 CCCCGACGGGGAG 243 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| || | ||||| | |||||||||||||||| |||| Sbjct 172 TCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCGGGAGACCGGGGTTCAATTC 231 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 232 CCCGACGGGGAGG 244 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| | |||||| | ||||||| Sbjct 243 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCAGGGATACTCACCACTA 184 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 183 TACTAACGAGGA 172 >seq422973 Length=1992 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| ||||||||||||||| ||||| Sbjct 1008 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTTGATTC 1067 Query 8718 CCCGAC---GAGGAGCAG 8732 |||||| ||||||||| Sbjct 1068 CCCGACAGGGAGGAGCAG 1085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| ||||||||||||||| ||||| Sbjct 1008 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTTGATTC 1067 Query 11789 CCCGACGAGGAGG 11801 |||||| ||||| Sbjct 1068 CCCGACAGGGAGG 1080 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| || ||||||||||||||| |||| |||||||| | ||||||| Sbjct 1079 CTCCCTGTCGGGGAATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTA 1020 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 1019 TACTAACGAGGAT 1007 >seq59002 Length=2818 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| ||||||||||||||| ||||| Sbjct 132 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTTGATTC 191 Query 8718 CCCGAC---GAGGAGCAG 8732 |||||| ||||||||| Sbjct 192 CCCGACAGGGAGGAGCAG 209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| ||||||||||||||| ||||| Sbjct 132 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTTGATTC 191 Query 11789 CCCGACGAGGAGG 11801 |||||| ||||| Sbjct 192 CCCGACAGGGAGG 204 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||||||| || ||||||||||||||| |||| |||||||| | ||||||| Sbjct 203 CTCCCTGTCGGGGAATCAAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTA 144 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 143 TACTAACGAGGAT 131 >seq776954 Length=2789 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| || | ||||| || |||||||| |||||| ||| Sbjct 1369 TCCTCGTTAGTATAGTGGTTAGTATCCCTGCCTGTCACATGGGAGACCAGGGTTCAGTTC 1310 Query 8718 CCCGACG 8724 ||||||| Sbjct 1309 CCCGACG 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 645981720076640