Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq198121 140 3e-28 seq713515 138 1e-27 seq345138 131 2e-25 seq235349 114 1e-20 seq416377 109 5e-19 seq335148 105 6e-18 seq364364 89.7 5e-13 seq778983 87.8 2e-12 seq488173 87.8 2e-12 seq449136 87.8 2e-12 seq658004 84.2 2e-11 >seq198121 Length=2544 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || ||||| || | Sbjct 439 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCC 381 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||||||||||||||| |||||| || Sbjct 380 CGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCT 321 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 320 TGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 261 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 260 TCTTCACGAAGATCTGCAT 242 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || ||||| || | Sbjct 667 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCC 609 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||||||||||||||| |||||| || Sbjct 608 CGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCT 549 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| || || ||||| | Sbjct 548 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTCAGGG 489 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 488 TCTTCACGAAGATCTGCAT 470 Score = 129 bits (142), Expect = 6e-25 Identities = 151/200 (76%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||||||| || ||| | | | || || ||||| || | Sbjct 211 GGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCC 153 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||||||||||||||| |||||| || Sbjct 152 CGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCT 93 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT-TTTGCCGGTCAGA 133640 ||| | ||||| ||||| ||||||| || |||| ||||| ||| || | ||||| Sbjct 92 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTCAACAGTCAGG 33 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| ||||| |||||||| Sbjct 32 GTTTTCACGAAGATCTGCAT 13 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| || | Sbjct 895 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCC 837 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||||||||||||||| |||||| || Sbjct 836 CGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCT 777 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 776 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 717 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 716 TCTTCACGAAGATCTGCAT 698 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || || ||| | || || || || || || Sbjct 1352 GTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGTTGTTTCCCA 1293 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| |||||||| ||||||||||| |||||| |||| Sbjct 1292 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 1233 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| || || ||||| || Sbjct 1232 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTCAGGGTC 1173 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1172 TTCACGAAGATCTGCAT 1156 Score = 113 bits (124), Expect = 4e-20 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCG-AGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||| || | Sbjct 1124 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCCAGCTGTTTCC 1066 Query 133522 CCGCGTAAATGAGCCG-CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 | || | || | || |||||||||||||||||| ||||||||||| |||||| | Sbjct 1065 CGGCAAAGATCAACCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCTTGGATCTTCGCC 1006 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| ||||||| || |||| ||| | ||| || || || || Sbjct 1005 TTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTAATGGTCTTACCAGTAAGG 946 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 945 GTCTTCACGAAGATCTGCAT 926 >seq713515 Length=817 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| | | | || || ||||||||||| Sbjct 443 GTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 501 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| |||||| || |||||||||||||| || || |||||| ||| Sbjct 502 TGCAAAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 561 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| |||| ||||| ||| ||||||||||| || Sbjct 562 CACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 621 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 622 CTTCACGAAGATCTGCAT 639 >seq345138 Length=2957 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || |||| | | | ||||| | ||| |||| Sbjct 2344 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCA-TCCTCCAACTGTTTGC 2402 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| ||| || || Sbjct 2403 CGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCT 2462 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || |||| ||||| ||| ||||| |||| | Sbjct 2463 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCCATCAGGG 2522 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 2523 TCTTCACGAAGATCTGCAT 2541 >seq235349 Length=927 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||||||| |||| || ||||| || | ||| | | | || || |||| Sbjct 55 ATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGTGCGGCCA-TCTTCCAGCT 113 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | |||||||| | || || ||||||||||||| | |||||| |||||||| | | | Sbjct 114 GTTTGCCCGCAAATATCAGGTGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTTGGGTTT 173 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| ||| ||| || |||| ||||| ||| ||||| | Sbjct 174 TGGCCTTGACATTCTCAATGGTGTCACTGGACTCGACCTCGAGGGTGATGGTCTTGCCTG 233 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || | ||| |||||||| Sbjct 234 TCAGGGTCTTCATGAAGATCTGCAT 258 >seq416377 Length=912 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||||| |||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 520 GGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGTGCGGCCA-TCTTCCAGCTGTTTGC 462 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || || ||||||||||||| | |||||| |||||||| | | || || Sbjct 461 CCGCAAATATCAGGTGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTTGGGTTTTGGCCT 402 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||| ||| || |||| ||||| ||| ||||| ||||| | Sbjct 401 TGACATTCTCAATGGTGTCACTGGACTCGACCTCGAGGGTGATGGTCTTGCCTGTCAGGG 342 Query 133642 TTTTTACGAAAATCTGC 133658 | || | ||| |||||| Sbjct 341 TCTTCATGAAGATCTGC 325 >seq335148 Length=7748 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || || || || | ||| | | | || || |||| Sbjct 7102 ATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCT 7160 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || || |||||||||| || |||||||| |||||||| ||| | Sbjct 7161 GTTTGCCGGCAAATATCAGACGCTGCTGGTTAGGTGGGATGCCCTCCTTGTCTTGGATTT 7220 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| ||||| || | || ||||| ||| ||||| | Sbjct 7221 TGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGACCTTGAGGGTGATGGTCTTGCCCG 7280 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 7281 TCAGGGTCTTCACGAAGATCTGCAT 7305 >seq364364 Length=1710 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| |||||||| || | ||| | | | || || ||||||||||| || | Sbjct 1221 CTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCCTGCAAAG 1279 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||| ||| ||||||||| || || |||||||| || || |||||| ||| | | | Sbjct 1280 ATGCGCCTCTGCTGGTCAGGGGGTATGCCTTCTTTATCCTGGATCTTAGCCTTCACATCC 1339 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 ||| ||||| |||| ||||| || | ||||| | | ||||| |||| | || || Sbjct 1340 CCAATGGTGTCACTGGGGTCCACCTCTAGGGTGATGCTCTTGCCAGTCAAGGACTTAACA 1399 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 1400 AAGATCTGCAT 1410 >seq778983 Length=1906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || |||| || ||||||||||| | ||||| ||| || ||| | || | ||| Sbjct 1546 AAGTGTAGAGTTGACTCTTTCTGGTTGTTGTAGTCGGACAGGGTGTGCCCATCTCCCAGC 1605 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | | | | ||||||||| || |||||||||||||| || |||| Sbjct 1606 TGTTTCCCGGCAGAGACTGGTCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCTTGGATC 1665 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| || | |||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 1666 -TTCGCTTTGGCATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCC 1724 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 | | | || || | ||| |||||||| Sbjct 1725 AGCCGGGGTCTTCATGAAGATCTGCAT 1751 >seq488173 Length=1145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 133511 GAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 |||||||||||| || | ||| ||| ||||||||| ||| |||| ||||| || || Sbjct 567 GAGCTGCTTGCCTGCAAAGATGCGCCTCTGCTGGTCAGGAAGGATACCTTCTTTATCCTG 508 Query 133571 GATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 |||||| ||| | | ||||| |||| |||| ||||| |||| ||||| ||| || Sbjct 507 GATCTTGGCCTTCACATTCTCAATGATGTCACTGGGTTCCACCTCGAGGGTGATGGTCTT 448 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||| | || || | || |||||||| Sbjct 447 GCTTGTC-GGGTCTTCAAAAAGATCTGCAT 419 >seq449136 Length=3640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/156 (73%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| |||||||| | | || |||||||||||||| |||||||| || | Sbjct 82 TCTTCCAGCTGTTTGCCCGCAAATACCAGACGCTGCTGGTCGGGTGGGATGCCCTCGTCT 141 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 | ||| ||| | ||||| | || | ||||| ||||||| || |||| ||||| Sbjct 142 TGGGT----TTTGGCCTTGACATTCTGGATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 197 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | ||| | ||| || || ||||| |||||||| Sbjct 198 GGTCTCGCCCGCCAGGGTCTTCACGAAGATCTGCAT 233 >seq658004 Length=3462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCG 133524 ||||||| || || || ||||| || | || | || ||| || | ||||||||| | Sbjct 1425 TGGACTCCTTTTGGATGTTGTAGTCACACAAAGCACACCCGTCTTCCAACTGCTTGCCAG 1484 Query 133525 CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 | ||| || | ||||| || ||||| || |||||||| | ||| ||| |||| Sbjct 1485 CAAAAACCAGTC--TGCTGATCAGGAGGAATTCCTTCCTTACCCTGGAT-TTTGGCTTTT 1541 Query 133585 GC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || || || || | || || || |||| ||||| ||| || || || || ||| Sbjct 1542 ACATTTTCTACTGTATCCGATGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTT 1601 Query 133644 TTTACGAAAATCTGCAT 133660 ||||||||||||||||| Sbjct 1602 TTTACGAAAATCTGCAT 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478338802583440