Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq551660 232 8e-56 seq498336 196 6e-45 seq55271 125 8e-24 seq686072 89.7 6e-13 seq500221 86.0 7e-12 seq244517 86.0 7e-12 >seq551660 Length=10507 Score = 232 bits (256), Expect = 8e-56 Identities = 606/918 (66%), Gaps = 10/918 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | || | ||| |||| |||||||| || || ||| ||| | || ||| Sbjct 2715 TTATGCCTCAGGTGCTCATCTAAACACTGGATGGC-AAGTGGTCGATATCCACGTCAAAC 2773 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||||||| |||| || | ||| | || ||| || | |||||| Sbjct 2774 TTATTGGCAAACAGGTGGTGCGCGT-----AGCATCAGCTCAA-ATCGCCAGCTCCGAAA 2827 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | ||||||||| || |||||||| |||||||| ||||| || |||| || | | ||| Sbjct 2828 ATGCACACGGAGCGGACGTGCACCCCGCTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACA 2887 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||| ||| |||| || | ||| | | || ||||||||||| ||| Sbjct 2888 TCACCTTCAAAGTACTGC-ACTTGACCAGCCTCGCCACCGCGTGCATGTCGGACAAGTCA 2946 Query 162307 TACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | || |||| ||| | || || || | || | ||||| | || ||||| Sbjct 2947 TACTTATGG-CTTACGGACACTGAGCCTGGCACTTCGGGGATCCTCTGGATTGTGGCCCA 3005 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 | || ||| ||||| || || || || | | |||| ||||||||| || | ||| Sbjct 3006 GACGTATTCATCTGGGCTGTAGGTGTCTTGTGCCCACGCCATGAACTTTTGGATCTTTTC 3065 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | ||||| || || || || || Sbjct 3066 ATTTTCTAGCACATACCCCACATATCCCCTACTGACCACGAAGTAGGCACTGCCTGAGAA 3125 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | ||||||||| | | || | Sbjct 3126 AATGGGCGTTTCCAGCGGAGGACGCATTTTGACGGTCCCCGTGTTGGTCAGTTTCCCATT 3185 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 ||||| ||| ||| |||| || | |||| ||| | | ||||| || Sbjct 3186 CACGACTGCGTAATGCTTTTTCCATCTTTCTTCCTTATTGGATGGCATCCTCTCGGTTTC 3245 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| |||| || | || |||| | || || || || ||||| |||| Sbjct 3246 CAGGTTGTTTTCACCCATTAACGATTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAAT 3305 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || || |||||||| || | || ||||| | ||| | || ||| || Sbjct 3306 AGGAAAATCCTGACCACAGAGATTGATCAAGTACTTCCAGTGTGTGCTCATTCGGTAGAG 3365 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 || | | ||||| ||||||||||| || ||||||||||| || || || |||||||| Sbjct 3366 GTCTTTCATGCAGTTGAGATCGGCCTGAACTCGACTCCACGATGCATAAACCACGCTCTC 3425 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 |||| | |||| || ||||| || |||||| || || | |||| || | | Sbjct 3426 CAACTGACTGGCCACGAAGACGTTACGGAAACAGGACGTGATGCTGGTCACCGCAGCTAA 3485 Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 ||| | || | || || || ||||| | ||| || | ||||||||| |||||| Sbjct 3486 GAAGGACTCCTCTGACTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGAT 3545 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 ||||||||| | || || | ||| || || || || || |||||||||||||| || || Sbjct 3546 GGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACGATAGAATATGCGAT 3605 Query 162966 GGGGAACTCAGCCTCCTC 162983 || ||||| ||||| || Sbjct 3606 CGGAAACTCCGCCTCTTC 3623 >seq498336 Length=2642 Score = 196 bits (216), Expect = 6e-45 Identities = 238/323 (74%), Gaps = 1/323 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || ||||| || ||||| ||||| || | || Sbjct 1125 CATAGAGGGTGAGGCAGGATGTTCCTGAGATCTTTCCAGAACCAAAGGTATTGAAGAGAC 1066 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTG-TTCCAAAAAGTCAATGTAGAATTTCTG 171889 |||| |||| || || || |||| || || | ||||| || || | || || ||| | Sbjct 1065 ACATGTAACACCCCTCATCTTCCAGGGGGGGGATTCCAGAAGGTGATGGTCGAGTTTTGG 1006 Query 171890 AGTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGA 171949 ||||| || | || || || | | |||||| || | |||||||| |||||||| || Sbjct 1005 AGTCCCAGCTCGGTGATATTGATTCTGTCCTTATAGGCAGGCTGGATCACAACACCATGG 946 Query 171950 TTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACT 172009 |||| |||||| ||| |||||||||| ||||| |||||| | |||||||| || || Sbjct 945 TTCTTGCTGAAGGTGACCATGTTTTCTGGGCTGACAGCCTTCTTTTTCTGCCATGTCACA 886 Query 172010 ATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAAT 172069 |||| ||||| | | |||| ||||| |||||||| ||||||||||||||| | | Sbjct 885 CTTAAGACTTCCTGGGAACTTTGCAGAGAACATCTTAAGAAAGCAGGTGTGTTCAGTGGT 826 Query 172070 TCCCTTTCGTCTTGCGTTACCAC 172092 || ||||| || || || ||||| Sbjct 825 TCTCTTTCATCCTGGGTCACCAC 803 >seq55271 Length=871 Score = 125 bits (138), Expect = 8e-24 Identities = 394/598 (66%), Gaps = 23/598 (4%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | | |||||| || | | || || | | | Sbjct 631 TCCAGTTAAAGTAACTAAGATACAACTTATTGTTTTTGTCCACTTCCTTCAGATACTTTG 572 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 571 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 512 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 511 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 452 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 451 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 392 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| |||| | || || | | ||| | ||| ||||| | | | | Sbjct 391 TACACGTAGATATGGTAG--GTATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 334 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGT 177243 ||| || ||| || || ||| ||| || | ||| ||| || || || | | | | Sbjct 333 CCCATAGGTATGAATTTCAATGCTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCAT 275 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||||||||| ||||| ||||| | || || Sbjct 274 GCTCAGGGTTCCAGTTACTTACAACCCAGCAAACCAACTT-TTCTTTACTTGGCAC---- 220 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| |||| || | || | | || | || | | ||||| ||||| || ||||| | Sbjct 219 TTCAAATACGAA-GGGGTTTGTGCTCACTGTCAAGAAGCCATATGGCACTTGGATATCTG 161 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC----CTTGTTTGAAG 177416 |||| || | ||| || | || || ||||| | || || |||| ||| | || || Sbjct 160 AGTCCCGGCGGTAAGTCAGAGTCAGGTTGAACAAGTGCTCAATACCACTCTTCTGTGGAG 101 Query 177417 GGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGG 177474 ||| | | || ||||| || |||||||| ||||| || || |||| ||| |||| Sbjct 100 ----TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTGG 47 >seq686072 Length=2261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| ||| || || ||| | |||| ||| | || | ||| |||||||||| | Sbjct 525 GTTTGCTTGAAGTTGGTCACACTTCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 469 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 || || || | || || ||||| || | || |||| || ||||| || ||||| || Sbjct 468 CCAACCTGTTTCTTGGGGTCTTTGACATAGAGGGTGCTGGTGACAGACGTGGTCCCATTT 409 Query 171626 CGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATA 171685 | | || | | | |||||| || || || || || | ||||| ||||| | | Sbjct 408 GGGTTTAACAGACTCTCAGTACTGTTGTCAATCCCTGACACCGCAACCTTCCAGGAGAGT 349 Query 171686 ACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCA 171745 || || | ||| | |||||| ||||||||||| || |||| |||||| ||||| | Sbjct 348 ACTGGGGGTGGGCGAGCAGTGGCAGAGCAAGTGATATTTAGGTGATCTTCAAAGAATTTG 289 Query 171746 TAGTG 171750 ||||| Sbjct 288 TAGTG 284 >seq500221 Length=3546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || || | | || ||| Sbjct 1837 ACCATCTCGCCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTGTTCAGGAAGTACTTC 1778 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || |||| |||| | || || | | |||||||| || ||||| || | Sbjct 1777 CAGGGCAC--TGAGCTCCGAAGCAAGTCTTCCATGCAGTTCAGGTCAGCCTGCACCCTGG 1720 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || || ||| | || |||| | |||||||| ||| || | Sbjct 1719 ACCAGGAGGCATAAACCACCTTCACCAGCTTACTGGCTAGGAAGACATTTGGGAAGCATG 1660 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | | || || | |||||| | ||| | | || ||||| | || ||||| | Sbjct 1659 ATATAATGGCCTTGACGGCCTCTTGGAAAGTTTCTGGGGA-CTTTC-TGTCCACGTGGAT 1602 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| |||||||||||||| | || | ||| | ||||| || | || |||| Sbjct 1601 GCAGTATATGTTCTGAGGGGCGTACACAGCTCGCAGCAGCCTCTCAAAGTTTTCAGTCTT 1542 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||| ||||| |||||||| || || ||||| || Sbjct 1541 CTCGTGAACCACCATAGAATATGCAATAGGGAAGTC 1506 >seq244517 Length=1180 Score = 86.0 bits (94), Expect = 7e-12 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || || | | || ||| Sbjct 932 ACCATCTCGCCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTGTTCAGGAAGTACTTC 873 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || |||| |||| | || || | | |||||||| || ||||| || | Sbjct 872 CAGGGCAC--TGAGCTCCGAAGCAAGTCTTCCATGCAGTTCAGGTCAGCCTGCACCCTGG 815 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || || ||| | || |||| | |||||||| ||| || | Sbjct 814 ACCAGGAGGCATAAACCACCTTCACCAGCTTACTGGCTAGGAAGACATTTGGGAAGCATG 755 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | | || || | || ||| | ||| | | || ||||| | || ||||| | Sbjct 754 ATATAATGGCCTTGACTGCCTCTTGGAAAGTTTCTGGGGA-CTTTC-TGTCCACGTGGAT 697 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| |||||||||||||| | || | ||| | ||||| || | || ||||| Sbjct 696 GCAGTATATGTTCTGAGGGGCGTACACAGCTCGCAGCAGCCTCTCAAAGTTTTCAATCTT 637 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||| ||||| |||||||| || || ||||| || Sbjct 636 CTCGTGAACCACCATAGAATATGCAATAGGGAAGTC 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572351190217600