Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq631619 127 5e-24 seq517911 93.3 1e-13 >seq631619 Length=7703 Score = 127 bits (140), Expect = 5e-24 Identities = 363/553 (66%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 110468 TCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTT 110527 |||||| |||| || || || || || || || ||| | | || | || | | || Sbjct 3189 TCATGCCTCTCCCACTCTCTTCAATGCTGGCACCAATCGCCCAGAACTTTCTACCTATTT 3130 Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587 ||||| | || || ||||| |||||||| ||||||||| |||| || || ||| Sbjct 3129 CCTTCTGAGCATGAAAGATGACAGCATTGAAGGGATTTATGATACTCTAAAGCAATGTGC 3070 Query 110588 TCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG 110647 | | |||||||| |||||||||||||| || || | |||||| | | || Sbjct 3069 TTTGATTTCTAAGTCTGCTGGAGGAATTGGTGTTGCTGTGAGTTGTATTCGGGCTACTGG 3010 Query 110648 -AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCT 110706 ||| | || || | || || ||| | ||| ||||| |||||| | ||||| | Sbjct 3009 CAGCTAC-ATTGCTGGGACTAATGGCAATTCCAATGGCCTTGTACCAATGCTGAGAGTAT 2951 Query 110707 TCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTA 110763 || | || || ||| || |||||||||| || | | || ||||||||| Sbjct 2950 ACAGTAATACAGCTCGATACGTAGATCAAGGTGGAAACAAGCTTCTTGGGGCATTTGCTA 2891 Query 110764 TCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAG 110823 | || || |||||| ||||| ||| || ||||| || | || | || || || Sbjct 2890 TTTACCTGAAACCTTAGCATTTAGACATCTTTGAGTTTCTCGATTTAAAGAAGAACACAG 2831 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 || |||||||| || | ||| | || | ||| | |||||||||||| | |||| Sbjct 2830 GAAAGGAAGAACAGTATGCGAGGGATCTTTTCTTTGCCCTTTGGATTTCAGATCTCTTCA 2771 Query 110884 TGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGG 110941 ||||| | || || ||| || | |||||| | |||||||| || | |||||| Sbjct 2770 TGAAATGGGTGGAAACTAAT--CAGGACTGGTCTTTGATGTGTCCAAATGAGTGTCCTGG 2713 Query 110942 TCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || ||| || | ||| |||| ||||| | || || ||||| ||||| || | || Sbjct 2712 CCTGGATGAAGTTTGGGGAGAAGAATTTGAGAAGCTATATGAAAAGTATGAGAAGCAGGG 2653 Query 111002 CAAGTTTCGCAAA 111014 | |||||||| Sbjct 2652 TCACATTCGCAAA 2640 >seq517911 Length=2699 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| |||| || |||||| ||| ||||| || ||||| ||||| |||| |||||| Sbjct 1378 AAGAGTTGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTAT 1319 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 || ||||| |||||| | || | ||||||||||| | || |||||| || ||||| Sbjct 1318 ATTCTGGCTGAAGAAGAGAGGTCTTATGCCTGGACTTACTTTTTCCAATGAACTCATCAG 1259 Query 131977 GAGAGATGA 131985 |||||||| Sbjct 1258 CAGAGATGA 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174024429964766