Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq198121 107 1e-18 seq345138 102 5e-17 seq713515 91.5 1e-13 seq508291 89.7 3e-13 >seq198121 Length=2544 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| |||||| || |||||||| ||||| Sbjct 696 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 637 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 636 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 577 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| || | | | ||| |||||| || | || || Sbjct 576 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCGAC 518 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 517 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 470 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | || || || ||||| |||||| || |||||||| || | Sbjct 1384 CACCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAG 1325 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| |||||| || ||||| ||||| | |||||| || | | Sbjct 1324 ACAGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 1265 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | |||||| ||||| || ||| || | | | ||| |||||| || | || Sbjct 1264 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCG 1206 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 1205 ACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 1156 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| |||||| || |||||||| ||||| Sbjct 468 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 409 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 408 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 349 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| || | ||| ||| |||||| || | || || Sbjct 348 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 290 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 289 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 242 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||||||||| Sbjct 240 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 181 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 180 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 121 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| | | || | || | |||||| || | || || Sbjct 120 ATGCCTTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 62 Query 33702 GTCAACCGTGATCGT-TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || | | || | ||||| || ||||||||||| Sbjct 61 CTCGAGGGTGATGGTCTTCAACAGTCAGGGTTTTCACGAAGATCTGCAT 13 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 924 CCACCTCGGAGACGGAGAACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 865 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 864 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 805 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| || | | | ||| |||||| || | || || Sbjct 804 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCGAC 746 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 745 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 698 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || |||||| ||| || || |||||||| ||||| Sbjct 1154 CCACCTCGGAGACGGAGTACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1095 Query 33583 AGTGTGCGTTCGTCGTCCAAT-TGTTTTCCGGCAAAAATCAAACG-CTGCTGATCTTGCG 33640 || |||||| | || ||| | ||||| |||||||| ||||| | |||||| || | | Sbjct 1094 AGGGTGCGTCCATCTTCCCAGCTGTTTCCCGGCAAAGATCAACCCTCTGCTGGTCGGGAG 1035 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | |||||| ||||| || ||| || | | | ||| |||||| || | || Sbjct 1034 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCA 976 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||| || | || || || ||||||||||| Sbjct 975 ACCTCGAGGGTAATGGTCTTACCAGTAAGGGTCTTCACGAAGATCTGCAT 926 >seq345138 Length=2957 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 2315 CCACCTCGCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2374 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| ||||| |||||||| |||| ||||||||| || | || Sbjct 2375 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 2434 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||| || | ||| || | |||||| || | || || Sbjct 2435 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 2493 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || | | || || || ||||||||||| Sbjct 2494 CTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCAT 2541 >seq713515 Length=817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || ||||| |||||| || |||||||| || || Sbjct 413 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 472 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | ||||||||| | || Sbjct 473 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGG 532 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||||| || || || |||| ||| ||| |||||| || | ||||| Sbjct 533 ATGCCTTCTTTATCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCCAC 591 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 592 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 640 >seq508291 Length=5041 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 |||| || ||| | |||||| || || || |||||| || || ||||| | |||||| Sbjct 1475 CCTCGCAGACGCAGCACCAAGTGCAGCATGGACTCTTTCTGGAT-TTGTAGTTGGAGAGA 1533 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || |||| ||||| || ||||| |||| | | ||||| || | || | | Sbjct 1534 GTGCGGCCATCTTCCAGCTGTTTGCCTGCAAATATCAGATGTTGCTGGTCCCGTGGGATA 1593 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTC 33704 ||||| ||||| ||||| |||| |||| | | |||||| || | ||| || || Sbjct 1594 CCTTCCTTGTCTTGGATTTTG-GTTTTGACATTCTTGATGGTGTCACTGGGTTCGACCTC 1652 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||| | || || || | | || || | ||||||||||| Sbjct 1653 AAGGGTGGTGGTCTTGCCGGGCAGGGTCTTCATGAAGATCTGCAT 1697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325334862683520