Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq808566 91.5 1e-13 seq449898 91.5 1e-13 seq449207 91.5 1e-13 seq270171 91.5 1e-13 seq742764 86.0 6e-12 seq158964 84.2 2e-11 seq611773 82.4 7e-11 seq377023 82.4 7e-11 >seq808566 Length=7867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 1110 CAAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 1169 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| || || |||| || || || || Sbjct 1170 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCTAGGAGAAGAAGGGAATTCCTCCTGA 1229 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| || ||||||| | | | | || || Sbjct 1230 TCAGCAAAGACTGATTTTTGCTGGCAAACAGCTGGAAGATGGGTGTACTCTGTCTGACTA 1289 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| |||||||| ||||| | |||| ||| Sbjct 1290 CAACATCCAAAAGGAATCCACACTTCATCTTCTGTTGAGA 1329 >seq449898 Length=3288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | || || || | ||||| |||| || ||| | Sbjct 1464 CAAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 1405 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| ||||| || | || || || || Sbjct 1404 GCCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAAGAATTCCTCCTGA 1345 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| |||||||| | ||||||| | | | | || || Sbjct 1344 TCAGCAAAGACTGATTTTTTCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTA 1285 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| |||||||| || ||||| ||||| | ||||| ||| Sbjct 1284 CAACATTCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 1245 >seq449207 Length=1366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 125 CAAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 184 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| || || |||| || || || || Sbjct 185 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCTAGGAGAAGAAGGGAATTCCTCCTGA 244 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| || ||||||| | | | | || || Sbjct 245 TCAGCAAAGACTGATTTTTGCTGGCAAACAGCTGGAAGATGGGTGTACTCTGTCTGACTA 304 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| |||||||| ||||| | |||| ||| Sbjct 305 CAACATCCAAAAGGAATCCACACTTCATCTTCTGTTGAGA 344 >seq270171 Length=3188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 2315 CAAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 2374 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| ||||| || || || || || || Sbjct 2375 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 2434 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| | ||||||| | | | | || || Sbjct 2435 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTA 2494 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| || ||||| ||||| | ||||| ||| Sbjct 2495 CAACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 2534 >seq742764 Length=2195 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | || || || | |||| | || || ||| | Sbjct 1393 CAAGATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACCCTCACCCTAGAGGTTGAACC 1452 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | |||| || || | |||||| ||||| | ||| || || || || |||| Sbjct 1453 CTTTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGGAAGGAATTCCTCCCG 1512 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG---ATAGAAATGTCAGCG 25346 ||||||||||||| |||| | |||||||| | ||||||| ||| |||| | Sbjct 1513 ATCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATA-CTTTGTC--TG 1569 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | ||||| || ||||| || ||||| ||||| | ||||||||| Sbjct 1570 ACTACAACATCCAAAAGGAGTCCACACTTCATCTTGTGTTAAGA 1613 >seq158964 Length=5733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 4945 CAAGATGCAGATTTTAGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAA-C 4887 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || || |||| || || | |||||| |||||| ||||| || || || || || | Sbjct 4886 CATCGGATACAATAGAAAATGTAAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCTG 4827 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 ||||||||||||| |||| | ||||| || | ||||||| || || | || | Sbjct 4826 ATCAGCAAAGACTGATTTTTGCTGGCAAGCAGTTGGAAGATG---GACAT-ACTCTGACT 4771 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 || | || ||||| || ||||| ||||| | ||| | ||| Sbjct 4770 ACGACATCCAAAAGGAGTCCACACTTCATCTTGTGCTGAGA 4730 >seq611773 Length=2016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || ||||||| | || || || | ||||| | || || ||| | Sbjct 1691 CAAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACCCTTGAGGTTGAACC 1632 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||| || || | |||||| ||||| | ||||| || || || || || || Sbjct 1631 GTAAAATACAATAGAAAATGTAAAAGCCAAAATCAAGGATAAGGAAGGAATTCCTCCTGA 1572 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | | ||| || | ||||||| | | | | ||||| Sbjct 1571 TCAGCAAAGACTGATTTTTGCTGCCAAGCAGTTGGAAGATGGGCGTACTTTGTCTGATTA 1512 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| || ||||| ||||| | ||||| ||| Sbjct 1511 CAACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 1472 >seq377023 Length=3771 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | || || || | ||||| ||| || ||| | Sbjct 1891 CAAGATGCAGATTTTTGTAAAAACCCTCACAGGGAAGACCATCACCCTCGGGGTTGAA-C 1833 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | || |||| || || | |||||| ||||| ||||| || || || | || | Sbjct 1832 TATCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCTTCCTG 1773 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG---ATAGAAATGTCAGCG 25346 ||||||||||||| |||| | |||||||| | ||||||| ||| |||| | Sbjct 1772 ATCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATA-CTTTGTC--TG 1716 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 | ||||| || ||||| || ||||| |||| | ||||| ||||| Sbjct 1715 ACTACAACATCCAAAAGGAGTCCACGCTTCACCTTGTGTTGAGATT 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440415311737920