Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq498336 226 3e-54 seq686072 170 2e-37 seq345281 158 1e-33 seq152720 136 5e-27 seq334240 100 3e-16 seq152715 96.9 4e-15 seq173102 86.0 7e-12 >seq498336 Length=2642 Score = 226 bits (250), Expect = 3e-54 Identities = 243/320 (76%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | | |||||||| || || | | | | ||| || ||| Sbjct 803 GTGGTGACCCAGGATGAAAGAGAACCACTGAACACACCTGCTTTCTTAAGATGTTCTCTG 862 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| ||||| || | | ||| || |||||||||| ||| | || ||||| Sbjct 863 CAAAGTTCCCAGGAAGTCTTAAGTGTGACATGGCAGAAAAAGAAGGCTGTCAGCCCAGAA 922 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| || || ||| ||||||| || |||||||||| Sbjct 923 AACATGGTCACCTTCAGCAAGAACCATGGTGTTGTGATCCAGCCTGCCTATAAGGACAGA 982 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAAT-ACCACCTT 171310 || || |||||| |||| |||||||||||||| |||||||| || |||||| || || | Sbjct 983 ATCAATATCACCGAGCTGGGACTCCAAAACTCGACCATCACCTTCTGGAATCCCCCCCCT 1042 Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || || |||||||| |||| || ||||| || |||||||| ||||| || ||||| || Sbjct 1043 GGAAGATGAGGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGAAAGATCTCAGG 1102 Query 171371 GGTGGCCTGCCTCACCCTCT 171390 ||||||||||||||| Sbjct 1103 AACATCCTGCCTCACCCTCT 1122 >seq686072 Length=2261 Score = 170 bits (188), Expect = 2e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || || ||||| ||||| || ||||| || ||||| || Sbjct 263 GTACAGCCCACAGTATTCCTTCACTACAAATTCTTTGAAGATCACCTAAATATCACTTGC 322 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||| ||||| || || | | |||||| || ||| ||||| ||||| Sbjct 323 TCTGCCACTGCTCGCCCACCCCCAGTACTCTCCTGGAAGGTTGCGGTGTCAGGGATTGAC 382 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||| | | | ||||| || || ||||| ||||| ||| | Sbjct 383 AACAGTACTGAGAGTCTGTTAAACCCAAATGGGACCACGTCTGTCACCAGCACCCTCTAT 442 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| ||| | || |||||||| |||||||| ||| |||||||||| Sbjct 443 GTCAAAGACCCCAAGAAACAGGTTGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGA 502 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||||| | | |||| | ||||| |||| Sbjct 503 AGTGTGACCAACTTCAAGCAAACCCTGAGCAAAGGTA 539 >seq345281 Length=2749 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||||||||| || | ||| || | ||| || |||||||| | |||||||| |||||||| Sbjct 2638 CTTAAGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAA 2579 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || ||||||||||| |||||||| || ||||| || || Sbjct 2578 GGGCACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATC 2519 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || ||||| || ||||||||||| Sbjct 2518 CACCACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCAT 2474 >seq152720 Length=12186 Score = 136 bits (150), Expect = 5e-27 Identities = 216/308 (70%), Gaps = 14/308 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | | || || | ||||| ||||||||| |||| || ||| | Sbjct 10888 GTACTCCCTGGTGTTTGTCGTGGGCCTGGTGGGCAACGCCCTGGTGGTCCTGGTGCTCCT 10947 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| ||||||||||| || |||||||||||||| ||| ||||||||||| | || Sbjct 10948 GCAGTTCAAGAGGCTCAAGAGCATGACCAACATCTACCTCCTCAACCTGGCCGTCTCCGA 11007 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGA--ACTGGT 8787 |||||| | | ||||| || ||||| |||| ||| | || | | | | ||||| Sbjct 11008 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGA-TCAGCTACAAGCTGAAGAATGACTGGG 11066 Query 8788 GGGT--GGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCAC 8845 | | ||||||| |||||| ||| | | ||| || | | || | | | Sbjct 11067 TGTTCGGGGACGC---------CATGTGCAAGCTGCTCTCGGGGCTCTACTACATCGGCC 11117 Query 8846 TGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGT 8905 |||||||||| || | || ||||||||| |||| | |||||||| || || | ||| Sbjct 11118 TGTACAGCGAGATCTTCTTCATCATCCTGCTGACGGTCGACAGGTACCTGGCCATCGTGC 11177 Query 8906 ACGCGGTG 8913 |||| ||| Sbjct 11178 ACGCCGTG 11185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| || |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 11604 TGGACCTGGCCATCCAGGTGACCGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCGG 11663 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||||| || || ||||| |||||| Sbjct 11664 TGATCTACGTCTTCGTCGGCGAGCAGTTCC 11693 >seq334240 Length=2923 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 995 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 936 Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546 ||||||| ||||||||||| || || Sbjct 935 TAGAAGCCTACATGACAACGAAGAT 911 >seq152715 Length=1387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 517/816 (63%), Gaps = 50/816 (6%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||| | | |||| || | |||||||| ||||| | || |||| Sbjct 791 GTACTCCCTGGTGCTCGTCATTGGCCTCCTGGGCAATGCGGTGGTGGTGTGGGTGCTCAC 732 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | | |||||||||| |||||||| |||||| |||| ||||||||||| | || Sbjct 731 CGGCTGCCGGAGGCTCAGGGTCATGACCGACATCTACCTGCTCAACCTGGCCATCTCCGA 672 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| ||||| || ||||| || ||| | | | || | || Sbjct 671 CCTGCTCTTCCTGTTCACTCTCCCATTCTGGAT---CTACCATGTTGCGTGGCA----TG 619 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 |||| || || |||||| ||| | | ||| || | | || | || ||| Sbjct 618 ACTGGGTGTTCGGGGACGCCATGTGCAAGCTGCTCTCGGGGCTCTACGACATAGCCTTGT 559 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 | |||| || | || ||||||||| |||| | |||||||| || || | ||| ||| Sbjct 558 ATGGCGAGATCTTCTTCATCATCCTGCTGACGGTCGACAGGTACCTGGCCATCGTGCACG 499 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | | || || ||| || | | |||||| || ||||| || | ||| Sbjct 498 CCGTGTTTGCCCTGCGGGCCCGGACCGTCACCTTCGGCATCGTCTCCAGCGTCGTCACCT 439 Query 8969 GGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCA 9028 || ||||| ||| | | | | || || ||| |||| || ||| || Sbjct 438 GGGGCCTGGCAGTGCTAGCTGCGCTCCCCGAATTTGTCTTCCGGGAGTCC-------CC- 387 Query 9029 CAGGCAAGGG--GGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGG 9073 | | ||| |||||| ||| |||| ||| | ||| |||||| Sbjct 386 ---GGATGGGTTGGTCTG-CAACCCTCAGTACCCGGAGGAGGGGGAAGAGAGCTGGAAGC 331 Query 9074 GGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCT 9133 | | | || || |||| || | | |||| ||| ||| |||| | |||||| Sbjct 330 GCTTCCACGTGCTGAGGATGAATATCCTGAGCCTCGCCCTCCCTCTGCTCGTGATGGCCG 271 Query 9134 TCTGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGC 9193 | ||||||| |||||||| || || | | || || || | ||| | Sbjct 270 TGTGCTACTCAGGCATCATCAAAACGCTGCTGAGGTGCCCCA----GT--AAAAAGAAGG 217 Query 9194 AC---GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCT 9250 || ||| || | |||| || |||| ||||| ||||||||||| |||| |||| Sbjct 216 ACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTATTTTGTCTTCTGGACACCCT 157 Query 9251 ACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCAT--TTTTGG--GCCAG-ACTG 9305 ||||||| ||| | | |||| | |||| | || | | || | | ||| || Sbjct 156 ACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTTGGTCTTCGACGACAGCTGTG 97 Query 9306 TGAAGCGCGGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365 || || | | || | ||||| |||| || ||||| | |||||| || ||| || || Sbjct 96 TGCAGAACAGAGC-GCCTGGACGTGGCGCTGCTGGTGACCGAGATGGTCTCCTACATGCA 38 Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGG 9401 ||||||| ||||||| || |||||||| || ||||| Sbjct 37 CTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGG 2 >seq173102 Length=5580 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||| |||| ||| |||| || || | |||||| | ||||| |||| ||||| | Sbjct 4639 GTACTTCTTGGTCTTTGTGTTCGGCCTGCTCGGCAATTCTGTGGTGGTCCTGGTCCTGTT 4580 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721 ||||||||||| |||| | ||||||| |||| | |||| ||||||||||| Sbjct 4579 CAAGTACAAGAGACTCAAGTCCATGACCGACATGTACCTGCTCAACCTGGCC 4528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577354038638400